Mercurial > repos > iuc > samtools_markdup

diff test-data/stats.txt @ 9:40fa6c240105 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents d0a568e1904b
children
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--- a/test-data/stats.txt	Mon Nov 20 22:15:54 2023 +0000
+++ b/test-data/stats.txt	Sun Sep 08 03:26:14 2024 +0000
@@ -1,4 +1,4 @@
-COMMAND: samtools markdup -@ 0 -s coordsort.sam /tmp/tmpea8lprdd/files/2/2/4/dataset_224df993-f6bf-4c7d-99a1-2e9dd51c2a57.dat
+COMMAND: samtools markdup -@ 0 -m t -s -f /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_9e69bd59-3165-4ede-92bf-2f438627a6a1.dat -O BAM coordsort.sam /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_ccf59cfe-ffbd-41d5-9412-d7a7ac6e65d9.dat
 READ: 16
 WRITTEN: 16
 EXCLUDED: 3
@@ -14,3 +14,4 @@
 DUPLICATE PRIMARY TOTAL: 6
 DUPLICATE TOTAL: 6
 ESTIMATED_LIBRARY_SIZE: 4
+