Mercurial > repos > iuc > samtools_markdup

diff samtools_markdup.xml @ 9:40fa6c240105 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents a389f74c3630
children
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--- a/samtools_markdup.xml	Mon Nov 20 22:15:54 2023 +0000
+++ b/samtools_markdup.xml	Sun Sep 08 03:26:14 2024 +0000
@@ -127,7 +127,8 @@
             <param name="bamfile" value="3_two_read_mapped.sam" ftype="sam" />
             <param name="stats" value="yes"/>
             <assert_stderr>
-                <has_line line="[markdup] error: no MC tag. Please run samtools fixmate on file first."/>
+                <has_line line="samtools markdup: error, no MC tag. Please run samtools fixmate on file first."/>
+                <has_line line="samtools markdup: error, unable to assign pair hash key."/>
             </assert_stderr>
         </test>
         <!-- 6) check optical distance and check -c option -->