Mercurial > repos > iuc > samtools_markdup
view test-data/3_two_read_mapped.sam @ 8:a389f74c3630 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit cd62639660bef041ba14ecff337fb98e84e75d8a
| author | iuc |
|---|---|
| date | Mon, 20 Nov 2023 22:15:54 +0000 |
| parents | d0a568e1904b |
| children |
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@HD VN:1.4 SO:queryname @SQ SN:ref1 LN:45 @SQ SN:ref2 LN:40 of1 99 ref1 10 30 23M = 8 2 AAGTCGGCAGCGTCAGATGTGTA ??????????????????????? of1 147 ref1 8 30 23M = 10 -2 CTGTCTCTTATACACATCTCCTT ??????????????????????? r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * r003 16 ref1 29 30 6H5M * 0 0 TAGGC * r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * r007 8 ref1 9 30 5H6M * 0 0 AGCTAA * r007 4 ref1 9 30 * * 0 0 GGGGGG * r008 12 ref1 9 30 5H6M * 0 0 AGCTAA * r008 4 ref1 9 30 * * 0 0 GGGGGG * uu1 4 * 0 30 * * 0 0 TAATTGGGTCTTCAGAGCACCTA ??????????????????????? x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ???????????????????????