view test-data/3_two_read_mapped.sam @ 3:d0a568e1904b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:14:29 +0000
parents
children
line wrap: on
line source

@HD	VN:1.4	SO:queryname
@SQ	SN:ref1	LN:45
@SQ	SN:ref2	LN:40
of1	99	ref1	10	30	23M	=	8	2	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????
of1	147	ref1	8	30	23M	=	10	-2	CTGTCTCTTATACACATCTCCTT	???????????????????????
r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*
r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100
r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*
r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*
r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
r007	8	ref1	9	30	5H6M	*	0	0	AGCTAA	*
r007	4	ref1	9	30	*	*	0	0	GGGGGG	*
r008	12	ref1	9	30	5H6M	*	0	0	AGCTAA	*
r008	4	ref1	9	30	*	*	0	0	GGGGGG	*
uu1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????