comparison test-data/test_input_1_b_regex.sam @ 0:740ce0a18f0d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit b3426aed6615742d96dfb8f7346a9e0d4e391a99

0:740ce0a18f0d

@HD	VN:1.4
@SQ	SN:insert	LN:599
@SQ	SN:ref2*HLA:1a:2:b	LN:40
@SQ	SN:ref3	LN:4
@SQ	SN:ref1	LN:45
@PG	ID:llama_{a}
@RG	ID:fish-[1]	PG:llama_{a}
@RG	ID:cow-[2]	PU:13_&^&&*(:332	PG:donkey
@RG	PU:*9u8jkjjkjd:	ID:colt
@PG	ID:bull	PP:donkey
@PG	ID:donkey
@CO	Do you know?
x7	0	ref2*HLA:1a:2:b	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-[2]	PG:Z:bull
x8	0	ref2*HLA:1a:2:b	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-[2]	PG:Z:bull
x9	0	ref2*HLA:1a:2:b	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-[2]	PG:Z:bull
x10	0	ref2*HLA:1a:2:b	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-[2]	PG:Z:bull
x11	0	ref2*HLA:1a:2:b	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-[2]	PG:Z:bull
x12	0	ref2*HLA:1a:2:b	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-[2]	PG:Z:bull
r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey
r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey
r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey
r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey
r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey
r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey