Mercurial > repos > iuc > samtools_merge
comparison samtools_merge.xml @ 6:a7617eb92baf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 13:00:31 +0000 |
| parents | 65a38e8c8e2a |
| children |
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| 5:cae2794d2deb | 6:a7617eb92baf |
|---|---|
| 108 <output name="output" file="3.merge.expected.bam" ftype="bam" lines_diff="16" /> | 108 <output name="output" file="3.merge.expected.bam" ftype="bam" lines_diff="16" /> |
| 109 </test> | 109 </test> |
| 110 <!--Merge 4 - merge all presented on the command line, combine PG and RG rather than dedup --> | 110 <!--Merge 4 - merge all presented on the command line, combine PG and RG rather than dedup --> |
| 111 <test> | 111 <test> |
| 112 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam" /> | 112 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam" /> |
| 113 <param name="idrg" value="-c" /> | 113 <param name="idrg" value="true" /> |
| 114 <param name="idpg" value="-p" /> | 114 <param name="idpg" value="true" /> |
| 115 <output name="output" file="4.merge.expected.bam" ftype="bam" lines_diff="16" /> | 115 <output name="output" file="4.merge.expected.bam" ftype="bam" lines_diff="16" /> |
| 116 </test> | 116 </test> |
| 117 <!-- Merge 5 - ID and SN with regex in them (probably not necessary for the galaxy tool because just different input) --> | 117 <!-- Merge 5 - ID and SN with regex in them (probably not necessary for the galaxy tool because just different input) --> |
| 118 <test> | 118 <test> |
| 119 <param name="bamfiles" value="test_input_1_a_regex.sam,test_input_1_b_regex.sam" /> | 119 <param name="bamfiles" value="test_input_1_a_regex.sam,test_input_1_b_regex.sam" /> |