Mercurial > repos > iuc > samtools_merge
comparison samtools_merge.xml @ 2:b40e2d865d52 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 1354b1358df89a922c3243f7e27ce789094b8644"
| author | iuc |
|---|---|
| date | Sun, 19 Dec 2021 15:57:10 +0000 |
| parents | 8890e2d4c068 |
| children | 36677f429310 |
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| 1:8890e2d4c068 | 2:b40e2d865d52 |
|---|---|
| 120 <output name="output" file="5.merge.expected.bam" ftype="bam" lines_diff="16" /> | 120 <output name="output" file="5.merge.expected.bam" ftype="bam" lines_diff="16" /> |
| 121 </test> | 121 </test> |
| 122 <!-- Merge 6 - Merging with bedfile --> | 122 <!-- Merge 6 - Merging with bedfile --> |
| 123 <test> | 123 <test> |
| 124 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam,test_input_1_c.bam" /> | 124 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam,test_input_1_c.bam" /> |
| 125 <param name="bed" value="yes" /> | |
| 126 <param name="bed_file" value="test_input_1_a.bed" /> | 125 <param name="bed_file" value="test_input_1_a.bed" /> |
| 127 <output name="output" file="6.merge.expected.bam" ftype="bam" lines_diff="16" /> | 126 <output name="output" file="6.merge.expected.bam" ftype="bam" lines_diff="16" /> |
| 128 </test> | 127 </test> |
| 129 <!--Merge - 3 file SAM merge all presented on the command line override IDs to file names (not implemented in tool) --> | 128 <!--Merge - 3 file SAM merge all presented on the command line override IDs to file names (not implemented in tool) --> |
| 130 <!-- Sort inputs by PG, then merge (not implemented, since -t not supported in the tool) --> | 129 <!-- Sort inputs by PG, then merge (not implemented, since -t not supported in the tool) --> |