Mercurial > repos > iuc > samtools_merge
diff test-data/2.merge.expected.sam @ 0:740ce0a18f0d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit b3426aed6615742d96dfb8f7346a9e0d4e391a99
| author | iuc |
|---|---|
| date | Sun, 14 Oct 2018 13:44:49 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2.merge.expected.sam Sun Oct 14 13:44:49 2018 -0400 @@ -0,0 +1,67 @@ +@HD VN:1.4 +@SQ SN:insert LN:599 +@SQ SN:ref1 LN:45 +@SQ SN:ref2 LN:40 +@SQ SN:ref3 LN:4 +@RG ID:fish PG:donkey +@RG ID:cow PU:13_&^&&*(:332 +@RG PU:*9u8jkjjkjd: ID:colt +@RG ID:fish-55424A4 PG:llama +@RG ID:cow-3A2CCEF5 PU:13_&^&&*(:332 PG:donkey-4861F4EF +@RG PU:*9u8jkjjkjd: ID:colt-6ADB4A65 +@RG ID:fish-39E5EF +@RG ID:cow-1802EEEC PU:13_&^&&*(:332 +@RG PU:*9u8jkjjkjd: ID:colt-7EC68B3F +@PG ID:bull PP:donkey +@PG ID:donkey +@PG ID:moose +@PG PP:moose ID:cow +@PG ID:llama +@PG ID:bull-2B019719 PP:donkey-4861F4EF +@PG ID:donkey-4861F4EF +@PG ID:bull-60104A41 PP:donkey-2EE20DF8 +@PG ID:donkey-2EE20DF8 +@CO +@CO Do you know? +@CO Do you know? +@CO Another comment from test_input_1_c +r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull +r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull +r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish +r005 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r008 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 +r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow +r006 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r007 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r009 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +r010 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt +r007 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r010 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +r003 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:cow +r006 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r009 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish +r005 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF +r008 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 +x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull +x7 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x10 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull +x8 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x11 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull +x9 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x12 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull +x10 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x13 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull +x11 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x14 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow +x12 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 +x15 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 +u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? +u2 4 * 0 30 * * 0 0 TAATTAAGTCTACAGAAAAAAAA ???????????????????????