Mercurial > repos > iuc > samtools_merge
diff test-data/test_input_1_b_regex.sam @ 0:740ce0a18f0d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit b3426aed6615742d96dfb8f7346a9e0d4e391a99
| author | iuc |
|---|---|
| date | Sun, 14 Oct 2018 13:44:49 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_input_1_b_regex.sam Sun Oct 14 13:44:49 2018 -0400 @@ -0,0 +1,24 @@ +@HD VN:1.4 +@SQ SN:insert LN:599 +@SQ SN:ref2*HLA:1a:2:b LN:40 +@SQ SN:ref3 LN:4 +@SQ SN:ref1 LN:45 +@PG ID:llama_{a} +@RG ID:fish-[1] PG:llama_{a} +@RG ID:cow-[2] PU:13_&^&&*(:332 PG:donkey +@RG PU:*9u8jkjjkjd: ID:colt +@PG ID:bull PP:donkey +@PG ID:donkey +@CO Do you know? +x7 0 ref2*HLA:1a:2:b 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-[2] PG:Z:bull +x8 0 ref2*HLA:1a:2:b 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-[2] PG:Z:bull +x9 0 ref2*HLA:1a:2:b 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-[2] PG:Z:bull +x10 0 ref2*HLA:1a:2:b 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-[2] PG:Z:bull +x11 0 ref2*HLA:1a:2:b 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-[2] PG:Z:bull +x12 0 ref2*HLA:1a:2:b 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-[2] PG:Z:bull +r005 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt PG:Z:donkey +r006 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt PG:Z:donkey +r007 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt PG:Z:donkey +r007 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:donkey +r006 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt PG:Z:donkey +r005 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt PG:Z:donkey