comparison test-data/tag.fi.sort.expected.sam @ 0:00d1f08bdcdc draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit aa97817f89e4ac6e7bb2326a51ecbc91830de5df

0:00d1f08bdcdc

@HD	VN:1.4	SO:unknown
@SQ	SN:insert	LN:599
@SQ	SN:ref1	LN:45
@SQ	SN:ref2	LN:40
@SQ	SN:ref3	LN:4
@PG	ID:llama
@RG	ID:fish	PG:llama
@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
@RG	PU:*9u8jkjjkjd:	ID:colt
@PG	ID:bull	PP:donkey
@PG	ID:donkey
@CO	Do you know?
x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull	AS:i:65100
x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:0	FI:A:b
x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull	FI:Z:a
x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:20	FI:i:1
x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull	AS:i:10	FI:f:1.5
x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull	AS:i:50	FI:i:2
r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey	AS:i:100	FI:f:2.5
r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey	FI:i:3
r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey	AS:i:-5	FI:f:3.5
r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey	AS:i:1	FI:i:4
r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey	AS:i:20	FI:f:4.5
r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey	AS:i:10	FI:i:5