Mercurial > repos > iuc > samtools_view
comparison macros.xml @ 2:02afb5ea2fce draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit 1047dc0e36a1c28492d7cd1e860c89ecf3ba30c8
| author | iuc |
|---|---|
| date | Thu, 27 Sep 2018 08:51:16 -0400 |
| parents | 6ade12d94f9a |
| children | b91e0f76afe9 |
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| 1:6ade12d94f9a | 2:02afb5ea2fce |
|---|---|
| 72 ##compute the number of memory available to samtools sort (-m) | 72 ##compute the number of memory available to samtools sort (-m) |
| 73 ##use only 75% of available: https://github.com/samtools/samtools/issues/831 | 73 ##use only 75% of available: https://github.com/samtools/samtools/issues/831 |
| 74 addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && | 74 addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && |
| 75 ((addmemory=addmemory*75/100)) && | 75 ((addmemory=addmemory*75/100)) && |
| 76 ]]></token> | 76 ]]></token> |
| 77 <xml name="seed_input"> | |
| 78 <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> | |
| 79 </xml> | |
| 77 <xml name="flag_options"> | 80 <xml name="flag_options"> |
| 78 <option value="1">read is paired</option> | 81 <option value="1">read is paired</option> |
| 79 <option value="2">read is mapped in a proper pair</option> | 82 <option value="2">read is mapped in a proper pair</option> |
| 80 <option value="4">read is unmapped</option> | 83 <option value="4">read is unmapped</option> |
| 81 <option value="8">mate is unmapped</option> | 84 <option value="8">mate is unmapped</option> |