comparison samtools_view.xml @ 13:0dbf49c414ae draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit 1354b1358df89a922c3243f7e27ce789094b8644"

12:c370440f901e

<tool id="samtools_view" name="Samtools view" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>- reformat, filter, or subsample SAM, BAM or CRAM</description>
    <macros>
        <import>macros.xml</import>
        <token name="@REF_DATA@">
            ## additional reference data

                <when value="cram" />
            </conditional>
        </xml>
    </macros>
    <expand macro="requirements">
        <requirement type="package">gawk</requirement>
    </expand>
    <expand macro="stdio"/>
    <expand macro="version_command"/>
    <command><![CDATA[
        @ADDTHREADS@

13:0dbf49c414ae

<tool id="samtools_view" name="Samtools view" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>- reformat, filter, or subsample SAM, BAM or CRAM</description>
    <macros>
        <import>macros.xml</import>
        <token name="@REF_DATA@">
            ## additional reference data

                <when value="cram" />
            </conditional>
        </xml>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="5.1.0">gawk</requirement>
    </expand>
    <expand macro="stdio"/>
    <expand macro="version_command"/>
    <command><![CDATA[
        @ADDTHREADS@