Mercurial > repos > iuc > samtools_view
comparison macros.xml @ 14:5826298f6a73 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit 5cb103832529f17e5c72e7f122758c13519fbe5e
| author | iuc |
|---|---|
| date | Mon, 15 Aug 2022 09:19:43 +0000 |
| parents | c370440f901e |
| children | 6be888be75f9 |
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| 13:0dbf49c414ae | 14:5826298f6a73 |
|---|---|
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="@TOOL_VERSION@">samtools</requirement> | 4 <requirement type="package" version="@TOOL_VERSION@">samtools</requirement> |
| 5 <yield/> | 5 <yield/> |
| 6 </requirements> | 6 </requirements> |
| 7 </xml> | 7 </xml> |
| 8 <token name="@TOOL_VERSION@">1.13</token> | 8 <token name="@TOOL_VERSION@">1.15.1</token> |
| 9 <token name="@PROFILE@">20.05</token> | 9 <token name="@PROFILE@">20.05</token> |
| 10 <token name="@FLAGS@"><![CDATA[ | 10 <token name="@FLAGS@"><![CDATA[ |
| 11 #set $flags = 0 | 11 #set $flags = 0 |
| 12 #if $filter | 12 #if $filter |
| 13 #set $flags = sum(map(int, str($filter).split(','))) | 13 #set $flags = sum(map(int, str($filter).split(','))) |
| 101 #else | 101 #else |
| 102 #set use_ref=False | 102 #set use_ref=False |
| 103 #end if | 103 #end if |
| 104 ]]></token> | 104 ]]></token> |
| 105 | 105 |
| 106 <xml name="optional_reference"> | 106 <xml name="optional_reference" token_help="" token_argument=""> |
| 107 <conditional name="addref_cond"> | 107 <conditional name="addref_cond"> |
| 108 <param name="addref_select" type="select" label="Use a reference sequence"> | 108 <param name="addref_select" type="select" label="Use a reference sequence"> |
| 109 <help>@HELP@</help> | 109 <help>@HELP@</help> |
| 110 <option value="no">No</option> | 110 <option value="no">No</option> |
| 111 <option value="history">Use a genome/index from the history</option> | 111 <option value="history">Use a genome/index from the history</option> |