Mercurial > repos > iuc > samtools_view
comparison samtools_view.xml @ 12:c370440f901e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit c5ded4208dd70e88596ddc725795a2401773f02d"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 12:33:46 +0000 |
| parents | df20f1fd453f |
| children | 0dbf49c414ae |
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| 11:df20f1fd453f | 12:c370440f901e |
|---|---|
| 2 <description>- reformat, filter, or subsample SAM, BAM or CRAM</description> | 2 <description>- reformat, filter, or subsample SAM, BAM or CRAM</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 <token name="@REF_DATA@"> | 5 <token name="@REF_DATA@"> |
| 6 ## additional reference data | 6 ## additional reference data |
| 7 #if $reffa!=None: | 7 #if $use_ref: |
| 8 -T '$reffa' | 8 -T "\$reffa" |
| 9 -t '$reffai' | 9 -t "\$reffai" |
| 10 #end if | 10 #end if |
| 11 </token> | 11 </token> |
| 12 <xml name="read_output_formatting"> | 12 <xml name="read_output_formatting"> |
| 13 <yield /> | 13 <yield /> |
| 14 <section name="adv_output" title="Read Reformatting Options" expanded="false"> | 14 <section name="adv_output" title="Read Reformatting Options" expanded="false"> |