# HG changeset patch
# User iuc
# Date 1564404615 14400
# Node ID 90944a49ad055043ef4953727a728850d52520fe
# Parent  fdc58a0cc1d4ef03eea11db727ed0bc1b6bdb6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6

diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/chr_m.fasta
--- a/test-data/cached_locally/chr_m.fasta	Tue Nov 20 06:21:33 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,335 +0,0 @@
->chrM
-GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA
-GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT
-TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT
-CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA
-AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG
-ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG
-GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA
-ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA
-AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA
-AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA
-TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA
-AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT
-GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC
-CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT
-CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA
-AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT
-TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC
-TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT
-GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT
-CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA
-CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG
-TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA
-TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC
-TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG
-AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG
-ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT
-AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC
-CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT
-ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG
-AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA
-ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA
-AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA
-ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG
-TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA
-ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG
-TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA
-CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA
-TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA
-AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT
-ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC
-AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca
-taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt
-tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg
-cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG
-ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT
-TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC
-CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA
-TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG
-CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG
-TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT
-CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT
-CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT
-AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA
-AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg
-tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt
-caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT
-GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT
-CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG
-GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA
-CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT
-AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC
-CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC
-CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA
-CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG
-TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC
-ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC
-ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA
-ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA
-TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA
-ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG
-GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC
-ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA
-CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC
-TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA
-CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT
-ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact
-acaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaa
-ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT
-ACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAATCCCCTTAT
-CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA
-TAAGCTCACACTGACTAATAATCTGAATCGGATTTGAAATAAATCTACTA
-GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC
-CTCCACCAAATATTTTCTAACCCAAGCCACCGCATCAATACTCCTCATAA
-TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA
-GTCTTCAACCCCACAGCGTCCATCATTATAACTTCAGCTCTCGCCATAAA
-ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA
-TCTCATTAACATCAGGTCTCATCCTACTTACATGACAAAAACTAGCCCCA
-ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT
-AACTATAGCCGTACTGTCAATCCTAGTAGGAGGCTGAGGCGGTCTCAACC
-AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA
-TGAATAACAGCTGTCCTAGTATATAACCCAACACTAACAATACTAAACAT
-ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA
-GCTCCTCTACTACAACACTATCACTCTCCCACACATGAAACAAAATACCT
-CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC
-CCCACTATCAGGATTCATACCCAAATGAATAATCATTCAAGAGCTCACCA
-AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC
-AACCTCTACTTCTACATACGACTAACCTATTCCACCTCACTGACCATATT
-CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA
-TTACTCTCTTACCCCCGTTAATTGTTATATCCTCCCTACTCCTCCCCCTA
-ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC
-CAAGAGCCTTCAAAGCTCTAAGCAAGTGAATCCACTTAATTCCTGCATAC
-TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT
-TTTATTAAGCTAAGCCCTTACTAGATTGGTGGGCTACCATCCCACGAAAT
-TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC
-CGCCGCCTAGAAAAAAAGGCGGGAGAAGCCCCGGCAGAAATTGAAGCTGC
-TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG
-AAGAGGATTCCAACCCCTGTCTTTAGATTTACAGTCTAATGCTTACTCAG
-CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA
-GACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGG
-AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC
-TACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCATGCATTC
-GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA
-CTGATTAGTCCCCCTGATAATTGGAGCACCTGATATAGCTTTCCCCCGAA
-TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC
-GCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCC
-TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA
-TTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCCATCAAC
-TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA
-AACCCCCCTATTCGTTTGATCTGTCCTTATTACGGCAGTACTCCTTCTCC
-TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT
-AACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCT
-TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA
-TCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTACTCAGGT
-AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT
-TGGCTTTCTAGGCTTCATCGTATGGGCTCACCACATGTTTACAGTAGGGA
-TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT
-ATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGG
-AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT
-TATTCACAGTAGGAGGTCTAACAGGAATCGTCCTAGCTAACTCATCCCTA
-GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT
-CCTGTCTATAGGAGCAGTCTTCGCCATTATGGGGGGATTTGTACACTGAT
-TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC
-TTTACAATTATATTCGTAGGGGTAAATATAACCTTCTTCCCACAACATTT
-CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT
-ATACAACATGAAATACCATCTCATCCATAGGATCTTTTATCTCACTTACA
-GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG
-AGAAGTGTCTACAGTAGAATTAACCTCAACTAATCTGGAATGACTACACG
-GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA
-AAAtaagaaaggaaggaatcgaaccccctctaactggtttcaagccaata
-tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC
-ATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATACCTCTATG
-GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA
-AGAACTCCTACACTTCCACGACCACACACTAATAATCGTATTCCTAATTA
-GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC
-CATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTT
-ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT
-ATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATAGGC
-CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT
-TGACTCCTACATGATCCCCACATCAGACCTAAAACCAGGAGAATTACGTC
-TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA
-ATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCT
-AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG
-TGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGCGGA
-TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA
-CTTCGAAGAATGATCTGCATCAATATTATAAAGTCACTAAGAAGCTATTA
-TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT
-GATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT
-AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT
-ATCCGACACACCCAGAAGTAAAGACAACCAAAATAACAAAACACTCTGCC
-CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA
-ACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATATTTCCCAGCAT
-CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC
-AACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCTATCCATAAC
-AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT
-TGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAA
-CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA
-GTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTAGCCCACTTTCT
-ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA
-CTATCAGCCTATTTATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCT
-AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT
-AGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCC
-TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC
-GTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAACACCTAATGACC
-CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC
-AGGAGCCCTATCAGCCCTCCTGATAACATCAGGACTAGCCATGTGATTTC
-ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT
-ACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGG
-CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT
-TTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCCTTTTAC
-CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC
-AGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCAACACCTCAG
-TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA
-GAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACT
-AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT
-TTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCAACAGGG
-TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT
-CCTACGCCAACTAAAATTCCACTTTACATCCAGCCACCACTTCGGATTCG
-AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG
-TACGTCTCTATTTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTA
-CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA
-AACCTCATACTGACACTCCTCACTAACACATTACTAGCCTCGCTACTCGT
-ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA
-GCCCATATGAATGCGGATTTGACCCTATAGGGTCAGCACGCCTCCCCTTC
-TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA
-AATTGCCCTCCTATTACCCCTTCCATGAGCATCCCAAACAACTAACCTAA
-ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC
-CTAGCCTACGAATGAACCCAAAAAGGACTAGAATGAACTGAGTATGGTAA
-TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT
-TCATAATTACCAACATGTCACTAGTCCATATTAATATCTTCCTAGCATTC
-ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC
-ACTCCTATGCCTAGAAGGAATAATACTATCACTATTCGTCATAGCAACCA
-TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC
-TTACTAGTATTTGCTGCCTGCGAACGAGCTCTAGGATTATCCCTACTAGT
-CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC
-TCCAATGCTAAAAATTATCATTCCCACAATCATACTTATGCCCCTTACAT
-GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA
-TTAATCAGCCTTATCAGCCTATCCCTCCTAAACCAACCTAGCAACAATAG
-CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC
-TGGTGTTGACAACATGACTACTGCCACTAATACTCATAGCCAGCCAACAC
-CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT
-AACCATACTTCAAACTTTCCTAATCATGACTTTTACCGCCACAGAACTAA
-TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC
-ATCACCCGCTGAGGCAACCAAACAGAACGCCTGAACGCAGGCCTCTACTT
-CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT
-CTATCCAAAACCTAACAGGCTCACTAAACTTCCTATTAATTCAATACTGA
-AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG
-TATAATAGCATTCATAGTCAAAATACCGGTATATGGTCTTCACCTCTGAC
-TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA
-GCCATTCTACTAAAACTAGGAGGCTACGGAATACTACGAATTACAACAAT
-ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC
-TGTGAGGAATAATCATAACTAGTTCCATCTGCTTGCGACAAACCGATCTA
-AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT
-AGCCGTCCTCATCCAAACACCATGAAGTTATATAGGAGCTACAGCCCTAA
-TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA
-AATTACGAACGTACCCATAGCCGAACTATAATCCTAGCCCGCGGGCTTCA
-AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA
-ACCTGGCCCTCCCTCCCAGCATTAACCTAATTGGAGAGCTATTCGTAGTA
-ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA
-TATCACCATCACCGCCCTCTACTCCCTATACATACTAATCACAACACAAC
-GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA
-GAAAACGCACTCATGGCCCTCCACATGACTCCCCTACTACTCCTATCACT
-TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA
-AAACACTAGATTGTGGATCTAGAAACAGAAACTTAATATTTCTTATTTAC
-CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA
-TGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTCTTAGGAA
-CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC
-CTCATACTAGTTTCACTATTAGTACTAACCCTCCCAATCATATTATCAAT
-CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA
-TCTCATATGCCTTCATTACTAGCCTAATTCCCACTATAATATTTATTCAC
-TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC
-CCTCAAACTATCCCTAAGCTTCAAACTAGATTACTTCTCAATAATTTTCG
-TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA
-TACATGCACTCAGATCCTTACATTACTCGATTTTTTAAATACTTACTTAC
-ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC
-TGTTCATCGGATGGGAGGGAGTAGGCATCATGTCATTCTTACTAATCGGA
-TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT
-TTATAACCGCATCGGGGATATCGGCTTCATCATGGCCATAGCCTGATTCC
-TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC
-AACCTTACCAACCTCCCGCTCCTAGGCCTCCTCCTAGCCGCAACTGGCAA
-ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC
-CTACACCAGTCTCAGCCCTACTCCACTCCAGCACAATAGTTGTAGCAGGC
-GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT
-CCAGTCACTTACCCTATGCCTAGGAGCCATCACCACACTATTCACAGCAA
-TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC
-TCCAGCCAACTAGGCCTGATAATCGTAACCATCGGTATCAATCAACCCTA
-CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT
-TTATATGTTCCGGATCCATTATCCACAGCCTAAATGACGAGCAAGATATC
-CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT
-AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT
-ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC
-TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG
-TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC
-TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC
-CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA
-CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG
-CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG
-ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC
-CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG
-CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC
-TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC
-CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT
-CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG
-TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA
-ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC
-CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA
-CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT
-AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC
-AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG
-TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC
-ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC
-CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG
-AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA
-ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT
-GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC
-GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA
-CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG
-AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT
-ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA
-GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC
-AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG
-GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC
-ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT
-ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT
-ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC
-AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT
-CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT
-CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC
-CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT
-CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA
-ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA
-TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT
-AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC
-CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC
-CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT
-CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT
-CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC
-ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT
-ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC
-TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC
-TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT
-CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC
-CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG
-TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA
-GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC
-AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC
-GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG
-CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT
-TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA
-ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA
-CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT
-CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA
-CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA
-GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac
-ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct
-gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt
-gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc
-acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac
-ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA
-CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT
-GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT
-AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA
-GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT
-TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC
-TTCTTCCCCC
diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/chr_m.fasta.fai
--- a/test-data/cached_locally/chr_m.fasta.fai	Tue Nov 20 06:21:33 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-chrM	16660	6	50	51
diff -r fdc58a0cc1d4 -r 90944a49ad05 test-data/cached_locally/fasta_indexes.loc
--- a/test-data/cached_locally/fasta_indexes.loc	Tue Nov 20 06:21:33 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-equCab2chrM	equCab2	Horse (Equus caballus): equCab2 chrM	${__HERE__}/chr_m.fasta