Mercurial > repos > iuc > sansa_annotate

annotate test-data/input.vcf @ 2:30079fa4e2fd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit f62fcf6b6a22e6514a5e455ab0e9b42ad712c1be"
author iuc
date Sat, 17 Apr 2021 08:49:25 +0000
parents fb00426402b0
children
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fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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1 ##fileformat=VCFv4.2
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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3 ##fileDate=20200728
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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4 ##ALT=<ID=DEL,Description="Deletion">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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5 ##ALT=<ID=DUP,Description="Duplication">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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6 ##ALT=<ID=INV,Description="Inversion">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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7 ##ALT=<ID=BND,Description="Translocation">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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8 ##ALT=<ID=INS,Description="Insertion">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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9 ##FILTER=<ID=LowQual,Description="Poor quality and insufficient number of PEs and SRs.">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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10 ##INFO=<ID=CIEND,Number=2,Type=Integer,Description="PE confidence interval around END">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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11 ##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="PE confidence interval around POS">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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12 ##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for POS2 coordinate in case of an inter-chromosomal translocation">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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13 ##INFO=<ID=POS2,Number=1,Type=Integer,Description="Genomic position for CHR2 in case of an inter-chromosomal translocation">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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14 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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15 ##INFO=<ID=PE,Number=1,Type=Integer,Description="Paired-end support of the structural variant">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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16 ##INFO=<ID=MAPQ,Number=1,Type=Integer,Description="Median mapping quality of paired-ends">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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17 ##INFO=<ID=SRMAPQ,Number=1,Type=Integer,Description="Median mapping quality of split-reads">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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18 ##INFO=<ID=SR,Number=1,Type=Integer,Description="Split-read support">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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19 ##INFO=<ID=SRQ,Number=1,Type=Float,Description="Split-read consensus alignment quality">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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20 ##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Split-read consensus sequence">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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21 ##INFO=<ID=CE,Number=1,Type=Float,Description="Consensus sequence entropy">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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22 ##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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23 ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Insertion length for SVTYPE=INS.">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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24 ##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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25 ##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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26 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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27 ##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Type of approach used to detect SV">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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28 ##INFO=<ID=INSLEN,Number=1,Type=Integer,Description="Predicted length of the insertion">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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29 ##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Predicted microhomology length using a max. edit distance of 2">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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30 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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31 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Log10-scaled genotype likelihoods for RR,RA,AA genotypes">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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32 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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33 ##FORMAT=<ID=FT,Number=1,Type=String,Description="Per-sample genotype filter">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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34 ##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the SV">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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35 ##FORMAT=<ID=RCL,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the left control region">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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36 ##FORMAT=<ID=RCR,Number=1,Type=Integer,Description="Raw high-quality read counts or base counts for the right control region">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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37 ##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Read-depth based copy-number estimate for autosomal sites">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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38 ##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# high-quality reference pairs">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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39 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality variant pairs">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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40 ##FORMAT=<ID=RR,Number=1,Type=Integer,Description="# high-quality reference junction reads">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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41 ##FORMAT=<ID=RV,Number=1,Type=Integer,Description="# high-quality variant junction reads">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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42 ##reference=../data/v1/genome.fasta
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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43 ##contig=<ID=chr10,length=135534747>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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44 ##contig=<ID=chr11,length=135006516>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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45 ##contig=<ID=chr11_gl000202_random,length=40103>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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46 ##contig=<ID=chr12,length=133851895>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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47 ##contig=<ID=chr13,length=115169878>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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48 ##contig=<ID=chr14,length=107349540>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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49 ##contig=<ID=chr15,length=102531392>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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50 ##contig=<ID=chr16,length=90354753>
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51 ##contig=<ID=chr17_ctg5_hap1,length=1680828>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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52 ##contig=<ID=chr17,length=81195210>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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53 ##contig=<ID=chr17_gl000203_random,length=37498>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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54 ##contig=<ID=chr17_gl000204_random,length=81310>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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55 ##contig=<ID=chr17_gl000205_random,length=174588>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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56 ##contig=<ID=chr17_gl000206_random,length=41001>
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57 ##contig=<ID=chr18,length=78077248>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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58 ##contig=<ID=chr18_gl000207_random,length=4262>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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59 ##contig=<ID=chr19,length=59128983>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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60 ##contig=<ID=chr19_gl000208_random,length=92689>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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61 ##contig=<ID=chr19_gl000209_random,length=159169>
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62 ##contig=<ID=chr1,length=249250621>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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63 ##contig=<ID=chr1_gl000191_random,length=106433>
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64 ##contig=<ID=chr1_gl000192_random,length=547496>
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65 ##contig=<ID=chr20,length=63025520>
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66 ##contig=<ID=chr21,length=48129895>
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67 ##contig=<ID=chr21_gl000210_random,length=27682>
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68 ##contig=<ID=chr22,length=51304566>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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69 ##contig=<ID=chr2,length=243199373>
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70 ##contig=<ID=chr3,length=198022430>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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71 ##contig=<ID=chr4_ctg9_hap1,length=590426>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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72 ##contig=<ID=chr4,length=191154276>
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73 ##contig=<ID=chr4_gl000193_random,length=189789>
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74 ##contig=<ID=chr4_gl000194_random,length=191469>
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75 ##contig=<ID=chr5,length=180915260>
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76 ##contig=<ID=chr6_apd_hap1,length=4622290>
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77 ##contig=<ID=chr6_cox_hap2,length=4795371>
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78 ##contig=<ID=chr6_dbb_hap3,length=4610396>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
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79 ##contig=<ID=chr6,length=171115067>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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80 ##contig=<ID=chr6_mann_hap4,length=4683263>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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81 ##contig=<ID=chr6_mcf_hap5,length=4833398>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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82 ##contig=<ID=chr6_qbl_hap6,length=4611984>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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83 ##contig=<ID=chr6_ssto_hap7,length=4928567>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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84 ##contig=<ID=chr7,length=159138663>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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85 ##contig=<ID=chr7_gl000195_random,length=182896>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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86 ##contig=<ID=chr8,length=146364022>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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87 ##contig=<ID=chr8_gl000196_random,length=38914>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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88 ##contig=<ID=chr8_gl000197_random,length=37175>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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89 ##contig=<ID=chr9,length=141213431>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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90 ##contig=<ID=chr9_gl000198_random,length=90085>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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91 ##contig=<ID=chr9_gl000199_random,length=169874>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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92 ##contig=<ID=chr9_gl000200_random,length=187035>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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93 ##contig=<ID=chr9_gl000201_random,length=36148>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
94 ##contig=<ID=chrM,length=16571>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
95 ##contig=<ID=chrUn_gl000211,length=166566>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
96 ##contig=<ID=chrUn_gl000212,length=186858>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
97 ##contig=<ID=chrUn_gl000213,length=164239>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
98 ##contig=<ID=chrUn_gl000214,length=137718>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
99 ##contig=<ID=chrUn_gl000215,length=172545>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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100 ##contig=<ID=chrUn_gl000216,length=172294>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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101 ##contig=<ID=chrUn_gl000217,length=172149>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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102 ##contig=<ID=chrUn_gl000218,length=161147>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
103 ##contig=<ID=chrUn_gl000219,length=179198>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
104 ##contig=<ID=chrUn_gl000220,length=161802>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
105 ##contig=<ID=chrUn_gl000221,length=155397>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
106 ##contig=<ID=chrUn_gl000222,length=186861>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
107 ##contig=<ID=chrUn_gl000223,length=180455>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
108 ##contig=<ID=chrUn_gl000224,length=179693>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
109 ##contig=<ID=chrUn_gl000225,length=211173>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
110 ##contig=<ID=chrUn_gl000226,length=15008>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
111 ##contig=<ID=chrUn_gl000227,length=128374>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
112 ##contig=<ID=chrUn_gl000228,length=129120>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
113 ##contig=<ID=chrUn_gl000229,length=19913>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
114 ##contig=<ID=chrUn_gl000230,length=43691>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
115 ##contig=<ID=chrUn_gl000231,length=27386>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
116 ##contig=<ID=chrUn_gl000232,length=40652>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
117 ##contig=<ID=chrUn_gl000233,length=45941>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
118 ##contig=<ID=chrUn_gl000234,length=40531>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
119 ##contig=<ID=chrUn_gl000235,length=34474>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
120 ##contig=<ID=chrUn_gl000236,length=41934>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
121 ##contig=<ID=chrUn_gl000237,length=45867>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
122 ##contig=<ID=chrUn_gl000238,length=39939>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
123 ##contig=<ID=chrUn_gl000239,length=33824>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
124 ##contig=<ID=chrUn_gl000240,length=41933>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
125 ##contig=<ID=chrUn_gl000241,length=42152>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
126 ##contig=<ID=chrUn_gl000242,length=43523>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
127 ##contig=<ID=chrUn_gl000243,length=43341>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
128 ##contig=<ID=chrUn_gl000244,length=39929>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
129 ##contig=<ID=chrUn_gl000245,length=36651>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
130 ##contig=<ID=chrUn_gl000246,length=38154>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
131 ##contig=<ID=chrUn_gl000247,length=36422>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
132 ##contig=<ID=chrUn_gl000248,length=39786>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
133 ##contig=<ID=chrUn_gl000249,length=38502>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
134 ##contig=<ID=chrX,length=155270560>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
135 ##contig=<ID=chrY,length=59373566>
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
136 ##INFO=<ID=RDRATIO,Number=1,Type=Float,Description="Read-depth ratio of tumor vs. normal.">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
137 ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic structural variant.">
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
138 ##bcftools_viewVersion=1.10.2+htslib-1.10.2
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
diff changeset
139 ##bcftools_viewCommand=view sv.bcf; Date=Mon Sep 21 22:19:50 2020
fb00426402b0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit b9066cb246cbae9a24020a79cf53d2dd4462b77d"
iuc
parents:
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140 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR