Mercurial > repos > iuc > scanpy_cluster_reduce_dimension

directory /test-data/ @ 0:0e212e42ef88 draft

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file krumsiek11.h5ad 53588 -rw-r--r--
file krumsiek11.loom 44645 -rw-r--r--
file krumsiek11_counts_per_cell 16000 -rw-r--r--
file paul15_subsample.h5ad 838114 -rw-r--r--
file pbmc68k_reduced.h5ad 1306861 -rw-r--r--
file pl.clustermap.krumsiek11.png 59021 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsampl.png 9879 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 9879 -rw-r--r--
file pl.dotplot.krumsiek11.png 48916 -rw-r--r--
file pl.dpt_timeseries.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 113285 -rw-r--r--
file pl.heatmap.krumsiek11.png 15671 -rw-r--r--
file pl.highest_expr_genes.filter_genes_dispersion.krumsiek11-seurat.png 38537 -rw-r--r--
file pl.matrixplot.krumsiek11.png 15083 -rw-r--r--
file pl.paga.paul15_gauss_braycurtis.png 30197 -rw-r--r--
file pl.pca.pbmc68k_reduced.CD3D_CD79A_components_2d.pdf 68098 -rw-r--r--
file pl.pca_loadings.pp.pca.krumsiek11.png 34732 -rw-r--r--
file pl.pca_overview.pp.pca.krumsiek11.png 18555 -rw-r--r--
file pl.pca_variance_ratio.pp.pca.krumsiek11.png 12812 -rw-r--r--
file pl.scatter.krumsiek11.png 18162 -rw-r--r--
file pl.scatter.pca.krumsiek11.png 35730 -rw-r--r--
file pl.tsne.krumsiek11.png 11632 -rw-r--r--
file pl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.png 82753 -rw-r--r--
file pl.violin.pbmc68k_reduced_custom.png 54226 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.h5ad 30040 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.loom 34680 -rw-r--r--
file pp.filter_cells.number_per_cell.krumsiek11-max_genes.tabular 7354 -rw-r--r--
file pp.filter_genes.krumsiek11-min_counts.h5ad 43248 -rw-r--r--
file pp.filter_genes.number_per_gene.krumsiek11-min_counts.tabular 181 -rw-r--r--
file pp.filter_genes.number_per_gene.pbmc68k_reduced-max_cells.tabular 2727 -rw-r--r--
file pp.filter_genes_dispersion.krumsiek11-seurat.h5ad 35784 -rw-r--r--
file pp.filter_genes_dispersion.per_gene.krumsiek11-cell_ranger.tabular 405 -rw-r--r--
file pp.filter_genes_dispersion.per_gene.krumsiek11-seurat.tabular 308 -rw-r--r--
file pp.log1p.krumsiek11.h5ad 43248 -rw-r--r--
file pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 754120 -rw-r--r--
file pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 762232 -rw-r--r--
file pp.normalize_per_cell.krumsiek11.h5ad 43248 -rw-r--r--
file pp.normalize_per_cell.obs.krumsiek11.tabular 6776 -rw-r--r--
file pp.pca.krumsiek11.h5ad 70872 -rw-r--r--
file pp.pca.krumsiek11_chunk.h5ad 70872 -rw-r--r--
file pp.pca.variance.krumsiek11.tabular 250 -rw-r--r--
file pp.recipe_seurat.recipe_zheng17.h5ad 21131 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.h5ad 690560 -rw-r--r--
file pp.recipe_zheng17.random-randint.h5ad 4020048 -rw-r--r--
file pp.regress_out.krumsiek11.h5ad 43248 -rw-r--r--
file pp.scale.krumsiek11.h5ad 43248 -rw-r--r--
file pp.scale_max_value.krumsiek11.h5ad 43248 -rw-r--r--
file pp.sqrt.krumsiek11.h5ad 43248 -rw-r--r--
file pp.subsample.krumsiek11_fraction.h5ad 26608 -rw-r--r--
file pp.subsample.krumsiek11_n_obs.h5ad 12528 -rw-r--r--
file random-randint.h5ad 2025661 -rw-r--r--
file random.h5ad 42448 -rw-r--r--
file tl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.X_diffmap.tabular 38206 -rw-r--r--
file tl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 760416 -rw-r--r--
file tl.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 762788 -rw-r--r--
file tl.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.obs.tabular 1827 -rw-r--r--
file tl.dpt.neighbors.paul15_gauss_braycurtis.obs.tabular 86632 -rw-r--r--
file tl.louvain.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 756852 -rw-r--r--
file tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 774472 -rw-r--r--
file tl.pca.krumsiek11.h5ad 70872 -rw-r--r--
file tl.pca.variance_ratio.krumsiek11.tabular 250 -rw-r--r--
file tl.rank_genes_groups.krumsiek11.h5ad 62272 -rw-r--r--
file tl.score_genes.krumsiek11.h5ad 45808 -rw-r--r--
file tl.score_genes.krumsiek11.obs.tabular 7422 -rw-r--r--
file tl.score_genes_cell_cycle.krumsiek11.h5ad 49496 -rw-r--r--
file tl.score_genes_cell_cycle.krumsiek11.obs.tabular 22726 -rw-r--r--
file tl.tsne.krumsiek11.h5ad 48760 -rw-r--r--
file tl.tsne.krumsiek11_X_tsne.tabular 32596 -rw-r--r--
file tl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 763856 -rw-r--r--