Mercurial > repos > iuc > scanpy_cluster_reduce_dimension

directory /test-data/ @ 10:aaa5da8e73a9 draft

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file blobs.h5ad 32790 -rw-r--r--
file krumsiek11.h5ad 53588 -rw-r--r--
file krumsiek11.loom 44645 -rw-r--r--
file krumsiek11_counts_per_cell 16000 -rw-r--r--
file paul15_subsample.h5ad 838114 -rw-r--r--
file pbmc68k_reduced.h5ad 1306861 -rw-r--r--
file pl.clustermap.krumsiek11.png 55010 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsampl.png 9879 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 9879 -rw-r--r--
file pl.dotplot.krumsiek11.png 33066 -rw-r--r--
file pl.dpt_timeseries.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 113285 -rw-r--r--
file pl.draw_graph.png 186895 -rw-r--r--
file pl.heatmap.krumsiek11.png 15671 -rw-r--r--
file pl.highest_expr_genes.filter_genes_dispersion.krumsiek11-seurat.png 38537 -rw-r--r--
file pl.highly_variable_genes.seurat.blobs.png 34240 -rw-r--r--
file pl.matrixplot.krumsiek11.png 15083 -rw-r--r--
file pl.paga.paul15_gauss_braycurtis.png 30197 -rw-r--r--
file pl.pca.pbmc68k_reduced.CD3D_CD79A_components_2d.pdf 68098 -rw-r--r--
file pl.pca_loadings.pp.pca.krumsiek11.png 34732 -rw-r--r--
file pl.pca_overview.pp.pca.krumsiek11.png 9030 -rw-r--r--
file pl.pca_variance_ratio.pp.pca.krumsiek11.png 12812 -rw-r--r--
file pl.rank_genes_groups.rank_genes_groups.krumsiek11.png 54832 -rw-r--r--
file pl.rank_genes_groups_dotplot.rank_genes_groups.krumsiek11.png 125524 -rw-r--r--
file pl.rank_genes_groups_heatmap.rank_genes_groups.krumsiek11.png 57060 -rw-r--r--
file pl.rank_genes_groups_matrixplot.rank_genes_groups.krumsiek11.png 30015 -rw-r--r--
file pl.rank_genes_groups_stacked_violin.rank_genes_groups.krumsiek11.png 94790 -rw-r--r--
file pl.rank_genes_groups_violin.Ery.png 76511 -rw-r--r--
file pl.rank_genes_groups_violin.Mk.png 80779 -rw-r--r--
file pl.rank_genes_groups_violin.Mo.png 72732 -rw-r--r--
file pl.rank_genes_groups_violin.Neu.png 70798 -rw-r--r--
file pl.rank_genes_groups_violin.progenitor.png 88452 -rw-r--r--
file pl.scatter.krumsiek11.png 18111 -rw-r--r--
file pl.scatter.pca.krumsiek11.png 35730 -rw-r--r--
file pl.scatter.umap.pbmc68k_reduced.png 19567 -rw-r--r--
file pl.stacked_violin.krumsiek11.png 25327 -rw-r--r--
file pl.tsne.krumsiek11.png 11632 -rw-r--r--
file pl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.png 82753 -rw-r--r--
file pl.violin.pbmc68k_reduced_custom.png 90967 -rw-r--r--
file pp.calculate_qc_metrics.sparce_csr_matrix.h5ad 3376852 -rw-r--r--
file pp.combat.blobs.h5ad 88944 -rw-r--r--
file pp.downsample_counts.random-randint.h5ad 8083200 -rw-r--r--
file pp.filter_cells.krumsiek11-max_genes.h5ad 69016 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.h5ad 42800 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.loom 34680 -rw-r--r--
file pp.filter_genes.krumsiek11-min_counts.h5ad 63856 -rw-r--r--
file pp.filter_genes_dispersion.krumsiek11-seurat.h5ad 64744 -rw-r--r--
file pp.filter_rank_genes_groups.h5ad 88872 -rw-r--r--
file pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad 41208 -rw-r--r--
file pp.highly_variable_genes.seurat.blobs.h5ad 70920 -rw-r--r--
file pp.log1p.krumsiek11.h5ad 63856 -rw-r--r--
file pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 818748 -rw-r--r--
file pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 826860 -rw-r--r--
file pp.normalize_per_cell.krumsiek11.h5ad 43248 -rw-r--r--
file pp.normalize_total.krumsiek11.h5ad 66456 -rw-r--r--
file pp.pca.krumsiek11.h5ad 93488 -rw-r--r--
file pp.pca.krumsiek11_chunk.h5ad 70872 -rw-r--r--
file pp.pca.variance.krumsiek11.tabular 250 -rw-r--r--
file pp.recipe_seurat.recipe_zheng17.h5ad 97276 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.h5ad 690560 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.updated.h5ad 760564 -rw-r--r--
file pp.recipe_zheng17.random-randint.h5ad 4107320 -rw-r--r--
file pp.regress_out.krumsiek11.h5ad 63856 -rw-r--r--
file pp.scale.krumsiek11.h5ad 63856 -rw-r--r--
file pp.scale_max_value.krumsiek11.h5ad 63856 -rw-r--r--
file pp.sqrt.krumsiek11.h5ad 63856 -rw-r--r--
file pp.subsample.krumsiek11_fraction.h5ad 40240 -rw-r--r--
file pp.subsample.krumsiek11_n_obs.h5ad 12528 -rw-r--r--
file random-randint.h5ad 2025661 -rw-r--r--
file random.h5ad 42448 -rw-r--r--
file sparce_csr_matrix.h5ad 3254804 -rw-r--r--
file tl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 825172 -rw-r--r--
file tl.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 827848 -rw-r--r--
file tl.dpt.neighbors.paul15_gauss_braycurtis.obs.tabular 86632 -rw-r--r--
file tl.draw_graph.pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 829932 -rw-r--r--
file tl.leiden.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 822216 -rw-r--r--
file tl.louvain.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 821672 -rw-r--r--
file tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 839252 -rw-r--r--
file tl.pca.krumsiek11.h5ad 93488 -rw-r--r--
file tl.pca.variance_ratio.krumsiek11.tabular 250 -rw-r--r--
file tl.rank_genes_groups.krumsiek11.h5ad 79096 -rw-r--r--
file tl.rank_genes_groups.liblinear.krumsiek11.h5ad 2616948 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad 2616948 -rw-r--r--
file tl.score_genes.krumsiek11.h5ad 66456 -rw-r--r--
file tl.score_genes_cell_cycle.krumsiek11.h5ad 70104 -rw-r--r--
file tl.tsne.krumsiek11.h5ad 70304 -rw-r--r--
file tl.tsne.krumsiek11_X_tsne.tabular 32596 -rw-r--r--
file tl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 826836 -rw-r--r--