comparison macros.xml @ 16:72a6bebab2a5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0

15:aa0059118fb9

                    <expand macro="sanitize_query" />
                </param>
            </when>
            <when value="customfile">
                <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param>
            </when>
        </conditional>
    </xml>
    <xml name="param_num_categories">
        <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/>

    <xml name="params_inputs">
        <expand macro="pl_var_names"/>
        <expand macro="param_groupby"/>
        <expand macro="param_num_categories"/>
    </xml>
    <token name="@CMD_params_inputs@"><![CDATA[
    #if $method.var_names.type == 'custom'
    #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')])
    var_names=$var_names,
    #else if $method.var_names.type == 'customfile'

16:72a6bebab2a5

                    <expand macro="sanitize_query" />
                </param>
            </when>
            <when value="customfile">
                <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param>
                <param name="header" type="select" label="Header in the list of markers?">
                    <option value="included">Header incldued</option>
                    <option value="not_included">Header not included</option>
                </param>
            </when>
        </conditional>
    </xml>
    <xml name="param_num_categories">
        <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/>

    <xml name="params_inputs">
        <expand macro="pl_var_names"/>
        <expand macro="param_groupby"/>
        <expand macro="param_num_categories"/>
    </xml>
    <token name="@CMD_var_names_header_check@"><![CDATA[
header='infer'
#if $method.var_names.type == 'customfile' and $method.var_names.header == 'not_included' :
header=None
#end if
    ]]></token>
    <token name="@CMD_params_inputs@"><![CDATA[
    #if $method.var_names.type == 'custom'
    #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')])
    var_names=$var_names,
    #else if $method.var_names.type == 'customfile'