# HG changeset patch
# User iuc
# Date 1716056967 0
# Node ID d636ce5cde16c679acf008169456afdf80cd2e7b
# Parent  277313130da58c3ca4ef6d523c6508a3c4ff4a45
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de

diff -r 277313130da5 -r d636ce5cde16 filter.xml
--- a/filter.xml	Thu Mar 14 15:36:41 2024 +0000
+++ b/filter.xml	Sat May 18 18:29:27 2024 +0000
@@ -458,7 +458,7 @@
 `max_counts`, `max_genes` per call.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_cells.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.filter_cells.html>`__
 
 
 Filter genes based on number of cells or counts (`pp.filter_genes`)
@@ -472,14 +472,14 @@
 `max_counts`, `max_cells` per call.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.filter_genes.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.filter_genes.html>`__
 
 
 Filters out genes based on fold change and fraction of genes expressing the gene within and outside the groupby categories (`tl.filter_rank_genes_groups`)
 ==========================================================================================================================================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.filter_rank_genes_groups.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.tl.filter_rank_genes_groups.html>`__
 
 
 Annotate highly variable genes (`pp.highly_variable_genes`)
@@ -494,7 +494,7 @@
 ======================================================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.subsample.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.subsample.html>`__
 
 Downsample counts (`pp.downsample_counts`)
 ==========================================
@@ -503,7 +503,7 @@
 has been implemented by M. D. Luecken.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.downsample_counts.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.downsample_counts.html>`__
 
 
     ]]></help>
diff -r 277313130da5 -r d636ce5cde16 macros.xml
--- a/macros.xml	Thu Mar 14 15:36:41 2024 +0000
+++ b/macros.xml	Sat May 18 18:29:27 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">1.9.6</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-    <token name="@profile@">22.05</token>
+    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@profile@">21.09</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement>