Mercurial > repos > iuc > scanpy_inspect
diff inspect.xml @ 8:9d33775ec67d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
| author | iuc |
|---|---|
| date | Tue, 16 Mar 2021 12:59:22 +0000 |
| parents | 6c145a6868cc |
| children | c5d3684f7c4c |
line wrap: on
line diff
--- a/inspect.xml Wed May 20 16:10:30 2020 -0400 +++ b/inspect.xml Tue Mar 16 12:59:22 2021 +0000 @@ -232,12 +232,12 @@ #else if $method.method == "pp.log1p" sc.pp.log1p( - data=adata, + adata, copy=False) #else if $method.method == "pp.scale" sc.pp.scale( - data=adata, + adata, zero_center=$method.zero_center, #if $method.max_value max_value=$method.max_value, @@ -246,7 +246,7 @@ #else if $method.method == "pp.sqrt" sc.pp.sqrt( - data=adata, + adata, copy=False) #end if @@ -707,9 +707,9 @@ <has_text_matching expression="C=1.0"/> </assert_contents> </output> - <output name="anndata_out" file="tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad" ftype="h5ad" compare="sim_size"> + <output name="anndata_out" file="tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"> <assert_contents> - <has_h5_keys keys="X, obs, obsm, raw.X, raw.var, uns, var" /> + <has_h5_keys keys="X, obs, obsm, raw/X, raw/var, uns, var" /> </assert_contents> </output> </test> @@ -762,9 +762,9 @@ <has_text_matching expression="C=1.0"/> </assert_contents> </output> - <output name="anndata_out" file="tl.rank_genes_groups.liblinear.krumsiek11.h5ad" ftype="h5ad" compare="sim_size"> + <output name="anndata_out" file="tl.rank_genes_groups.liblinear.krumsiek11.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"> <assert_contents> - <has_h5_keys keys="X, obs, obsm, raw.X, raw.var, uns, var" /> + <has_h5_keys keys="X, obs, obsm, raw/X, raw/var, uns, var" /> </assert_contents> </output> </test>