# HG changeset patch # User iuc # Date 1581330556 18000 # Node ID 08192eebb47d41983b19c0e82d9eca4dbf68502c # Parent 9d1997b08ed6bfa458ecb8616e32903cd1b28c73 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85" diff -r 9d1997b08ed6 -r 08192eebb47d inspect.xml --- a/inspect.xml Wed Dec 18 16:04:45 2019 -0500 +++ b/inspect.xml Mon Feb 10 05:29:16 2020 -0500 @@ -804,7 +804,7 @@ - pct_dropout_by_{expr_type} (e.g. "pct_dropout_by_counts", percentage of cells this feature does not appear in) More details on the `scanpy documentation -`__ +`__ Compute a neighborhood graph of observations, using `pp.neighbors` ================================================================== @@ -823,7 +823,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -`__ +`__ Score a set of genes, using `tl.score_genes` ============================================ @@ -836,7 +836,7 @@ for Scanpy by Davide Cittaro. More details on the `scanpy documentation -`__ +`__ Score cell cycle genes, using `tl.score_genes_cell_cycle` ========================================================= @@ -846,7 +846,7 @@ `score_genes` for more explanation. More details on the `scanpy documentation -`__ +`__ Rank genes for characterizing groups, using `tl.rank_genes_groups` ================================================================== @@ -862,7 +862,7 @@ This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects More details on the `scanpy documentation -`__ +`__ Calculate an overlap score between data-deriven marker genes and provided markers (`tl.marker_gene_overlap`) @@ -875,13 +875,13 @@ ========================================= More details on the `scanpy documentation -`__ +`__ Scale data to unit variance and zero mean (`pp.scale`) ====================================================== More details on the `scanpy documentation -`__ +`__ Computes the square root the data matrix (`pp.sqrt`) ====================================================