changeset 18:56c0d4acef02 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c3d9d45e910ef2fad8a85e5f08c8122059a45634

--- a/macros.xml	Sat Sep 14 12:42:55 2024 +0000
+++ b/macros.xml	Thu Sep 19 06:44:57 2024 +0000
@@ -9,7 +9,7 @@
             <requirement type="package" version="1.26.4">numpy</requirement>
             <requirement type="package" version="2.2.2">pandas</requirement>
             <requirement type="package" version="1.14.1">scipy</requirement>
-            <requirement type="package" version="0.14.2">statsmodels</requirement>           
+            <requirement type="package" version="0.14.2">statsmodels</requirement>
             <yield />
         </requirements>
     </xml>
@@ -29,8 +29,8 @@
             <citation type="doi">10.1093/gigascience/giaa102</citation>
         </citations>
     </xml>
-    
-    
+
+
     <!-- param macros -->
     <xml name="sanitize_query" token_validinitial="string.printable">
         <sanitizer>
@@ -45,7 +45,7 @@
                 <add value=","/>
             </valid>
         </sanitizer>
-    </xml>      
+    </xml>
     <xml name="inputs_anndata">
         <param name="adata" type="data" format="h5ad" label="Annotated data matrix"/>
     </xml>
@@ -61,7 +61,7 @@
         <data name="hidden_output" format="txt" label="Log file" >
             <filter>advanced_common['show_log']</filter>
         </data>
-    </xml>    
+    </xml>
     <xml name="param_use_rep">
         <param argument="use_rep" type="text" value="" optional="true" label="Use the indicated representation" help="If not set, the representation is chosen automatically: for n_vars below 50, X is used, otherwise X_pca (uns) is used. If X_pca is not present, it's computed with default parameter">
                 <expand macro="sanitize_query"/>
@@ -546,7 +546,7 @@
     <!-- param macros -->
 
 
-    
+
     <!-- command macros -->
     <xml name="version_command">
         <version_command><![CDATA[python -c "import scanpy as sc;print('scanpy version: %s' % sc.__version__)"]]></version_command>
@@ -936,7 +936,7 @@
 #end if
     ]]>
     </token>
-    
+
     <xml name="params_seaborn_violinplot">
         <section name="seaborn_violinplot" title="Parameters for seaborn.violinplot">
             <param argument="bw_method" type="select" label="Name of a reference rule when computing the kernel bandwidth">
@@ -969,7 +969,7 @@
     #end if
     saturation=$method.seaborn_violinplot.saturation,
     ]]></token>
-   
+
     <xml name="param_color">
         <param argument="color" type="text" value="" optional="true" label="Keys for annotations of observations/cells or variables/genes" help="One or a list of comma-separated index or key from either '.obs' or '.var'">
             <expand macro="sanitize_query"/>
@@ -1017,7 +1017,7 @@
 #end if
     ]]>
     </token>
-    
+
     <xml name="param_legend_fontsize">
         <param argument="legend_fontsize" type="integer" optional="true" value="" label="Legend font size"/>
     </xml>