Mercurial > repos > iuc > schicexplorer_schicclustercompartments
diff test-data/scHicQualityControl/qc_report.txt @ 0:5426f006d7ed draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
author | iuc |
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date | Sat, 25 Jan 2020 04:38:26 -0500 |
parents | |
children | 0bc84d7d94d4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/scHicQualityControl/qc_report.txt Sat Jan 25 04:38:26 2020 -0500 @@ -0,0 +1,6 @@ +# QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev +scHi-C sample contained 20 cells: +Number of removed matrices containing bad chromosomes 0 +Number of removed matrices due to low read coverage (< 100000): 8 +Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 +12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. \ No newline at end of file