Mercurial > repos > iuc > schicexplorer_schicconsensusmatrices
changeset 3:38ece0c4e316 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c535679b4086f5bd1a75e9765b8708bf1bd2d81b
| author | iuc |
|---|---|
| date | Thu, 31 Jul 2025 16:44:31 +0000 |
| parents | 33b1c99cc709 |
| children | |
| files | macros.xml scHicConsensusMatrices.xml |
| diffstat | 2 files changed, 22 insertions(+), 15 deletions(-) [+] |
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--- a/macros.xml Fri Apr 14 14:27:25 2023 +0000 +++ b/macros.xml Thu Jul 31 16:44:31 2025 +0000 @@ -3,6 +3,12 @@ <token name="@TOOL_VERSION@">4</token> <token name="@PROFILE@">22.05</token> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">hicexplorer</xref> + </xrefs> + </xml> + <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">schicexplorer</requirement> @@ -173,4 +179,4 @@ <option value="plasma_r">plasma reversed</option> </param> </xml> -</macros> \ No newline at end of file +</macros>
--- a/scHicConsensusMatrices.xml Fri Apr 14 14:27:25 2023 +0000 +++ b/scHicConsensusMatrices.xml Thu Jul 31 16:44:31 2025 +0000 @@ -4,6 +4,7 @@ <token name="@BINARY@">scHicConsensusMatrices</token> <import>macros.xml</import> </macros> + <expand macro="xrefs"/> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ @BINARY@ @@ -19,10 +20,10 @@ ]]></command> <inputs> - + <expand macro="matrix_scooler_macro"/> <param name='clusters' type='data' format='txt' label='Cluster file' help='Cluster file created by scHicCluster, scHicClusterCompartments, scHicClusterMinHash or scHicClusterSVL'/> - + </inputs> <outputs> <data name="outFileName" from_work_dir="consensus_matrix.scool" format="scool" label="${tool.name} on ${on_string}: Consensus matrices"/> @@ -33,29 +34,29 @@ <param name='clusters' value='scHicConsensusMatrices/cluster_kmeans.txt' /> <output name="outFileName" ftype="scool"> <assert_contents> - <has_h5_keys keys='consensus_matrix_cluster_0, - consensus_matrix_cluster_0/bins, consensus_matrix_cluster_0/bins/chrom, + <has_h5_keys keys='consensus_matrix_cluster_0, + consensus_matrix_cluster_0/bins, consensus_matrix_cluster_0/bins/chrom, consensus_matrix_cluster_0/bins/end, consensus_matrix_cluster_0/bins/start, - consensus_matrix_cluster_0/chroms, consensus_matrix_cluster_0/chroms/length, - consensus_matrix_cluster_0/chroms/name, consensus_matrix_cluster_0/indexes, + consensus_matrix_cluster_0/chroms, consensus_matrix_cluster_0/chroms/length, + consensus_matrix_cluster_0/chroms/name, consensus_matrix_cluster_0/indexes, consensus_matrix_cluster_0/indexes/bin1_offset, consensus_matrix_cluster_0/indexes/chrom_offset, consensus_matrix_cluster_0/pixels, consensus_matrix_cluster_0/pixels/bin1_id, - consensus_matrix_cluster_0/pixels/bin2_id, consensus_matrix_cluster_0/pixels/count, - consensus_matrix_cluster_1, consensus_matrix_cluster_1/bins, consensus_matrix_cluster_1/bins/chrom, + consensus_matrix_cluster_0/pixels/bin2_id, consensus_matrix_cluster_0/pixels/count, + consensus_matrix_cluster_1, consensus_matrix_cluster_1/bins, consensus_matrix_cluster_1/bins/chrom, consensus_matrix_cluster_1/bins/end, consensus_matrix_cluster_1/bins/start, consensus_matrix_cluster_1/chroms, consensus_matrix_cluster_1/chroms/length, consensus_matrix_cluster_1/chroms/name, consensus_matrix_cluster_1/indexes, - consensus_matrix_cluster_1/indexes/bin1_offset, consensus_matrix_cluster_1/indexes/chrom_offset, + consensus_matrix_cluster_1/indexes/bin1_offset, consensus_matrix_cluster_1/indexes/chrom_offset, consensus_matrix_cluster_1/pixels, consensus_matrix_cluster_1/pixels/bin1_id, consensus_matrix_cluster_1/pixels/bin2_id, - consensus_matrix_cluster_1/pixels/count, consensus_matrix_cluster_2, consensus_matrix_cluster_2/bins, - consensus_matrix_cluster_2/bins/chrom, consensus_matrix_cluster_2/bins/end, consensus_matrix_cluster_2/bins/start, + consensus_matrix_cluster_1/pixels/count, consensus_matrix_cluster_2, consensus_matrix_cluster_2/bins, + consensus_matrix_cluster_2/bins/chrom, consensus_matrix_cluster_2/bins/end, consensus_matrix_cluster_2/bins/start, consensus_matrix_cluster_2/chroms, consensus_matrix_cluster_2/chroms/length, consensus_matrix_cluster_2/chroms/name, - consensus_matrix_cluster_2/indexes, consensus_matrix_cluster_2/indexes/bin1_offset, consensus_matrix_cluster_2/indexes/chrom_offset, - consensus_matrix_cluster_2/pixels, consensus_matrix_cluster_2/pixels/bin1_id, consensus_matrix_cluster_2/pixels/bin2_id, + consensus_matrix_cluster_2/indexes, consensus_matrix_cluster_2/indexes/bin1_offset, consensus_matrix_cluster_2/indexes/chrom_offset, + consensus_matrix_cluster_2/pixels, consensus_matrix_cluster_2/pixels/bin1_id, consensus_matrix_cluster_2/pixels/bin2_id, consensus_matrix_cluster_2/pixels/count'/> </assert_contents> </output> </test> - + </tests> <help><![CDATA[