Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

comparison scHicCreateBulkMatrix.xml @ 2:14e19124511c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c535679b4086f5bd1a75e9765b8708bf1bd2d81b
author iuc
date Thu, 31 Jul 2025 16:46:46 +0000
parents acb3ed49109e
children
comparison
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1:acb3ed49109e 2:14e19124511c
2 <description>creates the bulk matrix out of single-cell Hi-C interaction matrices</description> 2 <description>creates the bulk matrix out of single-cell Hi-C interaction matrices</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">scHicCreateBulkMatrix</token> 4 <token name="@BINARY@">scHicCreateBulkMatrix</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="xrefs"/>
7 <expand macro="requirements" /> 8 <expand macro="requirements" />
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 @BINARY@ 10 @BINARY@
10 11
11 --matrix '$matrix_scooler' 12 --matrix '$matrix_scooler'
14 15
15 --threads @THREADS@ 16 --threads @THREADS@
16 17
17 ]]></command> 18 ]]></command>
18 <inputs> 19 <inputs>
19 20
20 <expand macro="matrix_scooler_macro"/> 21 <expand macro="matrix_scooler_macro"/>
21 </inputs> 22 </inputs>
22 <outputs> 23 <outputs>
23 <data name="outFileName" from_work_dir="bulk_matrix.cool" format="scool" label="${tool.name} on ${on_string}: Bulk matrix"/> 24 <data name="outFileName" from_work_dir="bulk_matrix.cool" format="scool" label="${tool.name} on ${on_string}: Bulk matrix"/>
24 </outputs> 25 </outputs>