Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix
comparison test-data/scHicQualityControl/qc_report_chr1_chr2.txt @ 0:ec29352b062f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
| author | iuc |
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| date | Tue, 10 Mar 2020 15:12:00 -0400 |
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| -1:000000000000 | 0:ec29352b062f |
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| 1 # QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev | |
| 2 scHi-C sample contained 20 cells: | |
| 3 Number of removed matrices containing bad chromosomes 0 | |
| 4 Number of removed matrices due to low read coverage (< 100000): 8 | |
| 5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 | |
| 6 12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. |