Mercurial > repos > iuc > schicexplorer_schicdemultiplex

changeset 3:a49faacc7c1f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c535679b4086f5bd1a75e9765b8708bf1bd2d81b
author iuc
date Thu, 31 Jul 2025 16:46:06 +0000
parents f224fc9af1d3
children
files macros.xml scHicDemultiplex.xml
diffstat 2 files changed, 11 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Apr 14 14:20:29 2023 +0000
+++ b/macros.xml	Thu Jul 31 16:46:06 2025 +0000
@@ -3,6 +3,12 @@
     <token name="@TOOL_VERSION@">4</token>
     <token name="@PROFILE@">22.05</token>
 
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">hicexplorer</xref>
+        </xrefs>
+    </xml>
+
      <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">schicexplorer</requirement>
@@ -173,4 +179,4 @@
             <option value="plasma_r">plasma reversed</option>
         </param>
     </xml>
-</macros>
\ No newline at end of file
+</macros>
--- a/scHicDemultiplex.xml	Fri Apr 14 14:20:29 2023 +0000
+++ b/scHicDemultiplex.xml	Thu Jul 31 16:46:06 2025 +0000
@@ -4,6 +4,7 @@
         <token name="@BINARY@">scHicDemultiplex</token>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
         #import re
@@ -27,11 +28,11 @@
 
     ]]></command>
     <inputs>
-        
-        <param name='fastq' type="data" format="fastq, fastq.gz" label="Raw fastq file from Nagano 2017."/>
+
+        <param name='fastq' type="data" format="fastq,fastq.gz" label="Raw fastq file from Nagano 2017."/>
         <param name='barcodeFile' type="data" format="txt" label="barcode file" help="Use GSE94489_README.txt file "/>
         <param name='srrToSample' type="data" format="txt" label="SRR to Sample mapping file" help="The mappings from SRR number to sample id as given in the barcode file."/>
-        <param name="bufferSize" type="integer" value="20000000"  label="Buffer size" help="Number of lines to buffer in memory, if full, write the data to disk." />   
+        <param name="bufferSize" type="integer" value="20000000"  label="Buffer size" help="Number of lines to buffer in memory, if full, write the data to disk." />
 
     </inputs>
     <outputs>