Mercurial > repos > iuc > schicexplorer_schicmergematrixbins
comparison macros.xml @ 1:ecae4e42d40a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
| author | iuc |
|---|---|
| date | Tue, 10 Mar 2020 15:10:44 -0400 |
| parents | 18ac7f83ae0e |
| children | 47ef02546fe9 |
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| 0:18ac7f83ae0e | 1:ecae4e42d40a |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> | 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> |
| 3 <token name="@WRAPPER_VERSION@">1</token> | 3 <token name="@WRAPPER_VERSION@">4</token> |
| 4 | 4 |
| 5 <xml name="requirements"> | 5 <xml name="requirements"> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement> | 7 <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement> |
| 8 <yield /> | 8 <yield /> |
| 9 </requirements> | 9 </requirements> |
| 10 <version_command>@BINARY@ --version</version_command> | 10 <version_command>@BINARY@ --version</version_command> |
| 11 </xml> | 11 </xml> |
| 12 <xml name='matrix_mcooler_macro'> | 12 <xml name='matrix_scooler_macro'> |
| 13 <param name='matrix_mcooler' type="data" format="mcool" | 13 <param name='matrix_scooler' type="data" format="scool" |
| 14 label="Matrix to compute on"/> | 14 label="Matrix to compute on"/> |
| 15 </xml> | 15 </xml> |
| 16 <xml name='matrix_cooler_multiple_macro'> | 16 <xml name='matrix_cooler_multiple_macro'> |
| 17 <param name='matrix_cooler_multiple' type="data" format="cool" | 17 <param name='matrix_cooler_multiple' type="data" format="cool" |
| 18 label="Matricies to compute on" multiple="true"/> | 18 label="Matricies to compute on" multiple="true"/> |
| 19 </xml> | 19 </xml> |
| 20 <token name="@ESCAPE_IDENTIFIER_FASTQ@"><![CDATA[re.sub('[^\s\w\.]', '_', str($fastq.element_identifier))]]></token> | 20 <token name="@ESCAPE_IDENTIFIER_FASTQ@"><![CDATA[re.sub('[^\s\w\.]', '_', str($fastq.element_identifier))]]></token> |
| 21 <token name="@ESCAPE_IDENTIFIER_MCOOL@"><![CDATA[re.sub('[^\s\w\.]', '_', str($matrix_mcooler.element_identifier))]]></token> | 21 <token name="@ESCAPE_IDENTIFIER_SCOOL@"><![CDATA[re.sub('[^\s\w\.]', '_', str($matrix_scooler.element_identifier))]]></token> |
| 22 <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> | 22 <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> |
| 23 | 23 |
| 24 <xml name="citations"> | 24 <xml name="citations"> |
| 25 <citations> | 25 <citations> |
| 26 <citation type="doi">https://github.com/joachimwolff/scHiCExplorer</citation> | 26 <citation type="doi">https://github.com/joachimwolff/scHiCExplorer</citation> |