Mercurial > repos > iuc > schicexplorer_schicmergematrixbins

diff test-data/scHicQualityControl/qc_report_chr1_chr2.txt @ 0:18ac7f83ae0e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
author iuc
date Thu, 23 Jan 2020 16:03:51 -0500
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+++ b/test-data/scHicQualityControl/qc_report_chr1_chr2.txt	Thu Jan 23 16:03:51 2020 -0500
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+# QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev
+scHi-C sample contained 20 cells:
+Number of removed matrices containing bad chromosomes 0
+Number of removed matrices due to low read coverage (< 100000): 8
+Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
+12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.
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