Mercurial > repos > iuc > schicexplorer_schicmergetoscool
comparison macros.xml @ 0:6ffcffed0225 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
| author | iuc |
|---|---|
| date | Tue, 10 Mar 2020 15:15:52 -0400 |
| parents | |
| children | 70a13d0a950f |
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| -1:000000000000 | 0:6ffcffed0225 |
|---|---|
| 1 <macros> | |
| 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> | |
| 3 <token name="@WRAPPER_VERSION@">4</token> | |
| 4 | |
| 5 <xml name="requirements"> | |
| 6 <requirements> | |
| 7 <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement> | |
| 8 <yield /> | |
| 9 </requirements> | |
| 10 <version_command>@BINARY@ --version</version_command> | |
| 11 </xml> | |
| 12 <xml name='matrix_scooler_macro'> | |
| 13 <param name='matrix_scooler' type="data" format="scool" | |
| 14 label="Matrix to compute on"/> | |
| 15 </xml> | |
| 16 <xml name='matrix_cooler_multiple_macro'> | |
| 17 <param name='matrix_cooler_multiple' type="data" format="cool" | |
| 18 label="Matricies to compute on" multiple="true"/> | |
| 19 </xml> | |
| 20 <token name="@ESCAPE_IDENTIFIER_FASTQ@"><![CDATA[re.sub('[^\s\w\.]', '_', str($fastq.element_identifier))]]></token> | |
| 21 <token name="@ESCAPE_IDENTIFIER_SCOOL@"><![CDATA[re.sub('[^\s\w\.]', '_', str($matrix_scooler.element_identifier))]]></token> | |
| 22 <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> | |
| 23 | |
| 24 <xml name="citations"> | |
| 25 <citations> | |
| 26 <citation type="doi">https://github.com/joachimwolff/scHiCExplorer</citation> | |
| 27 <yield /> | |
| 28 </citations> | |
| 29 </xml> | |
| 30 | |
| 31 <xml name="colormap"> | |
| 32 <param argument="--colorMap" name="colormap" type="select" optional="True" label="Color map to use for the heatmap" help=" Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html"> | |
| 33 <option value="RdYlBu">RdYlBu</option> | |
| 34 <option value="Accent">Accent</option> | |
| 35 <option value="Spectral">Spectral</option> | |
| 36 <option value="Set1">Set1</option> | |
| 37 <option value="Set2">Set2</option> | |
| 38 <option value="Set3">Set3</option> | |
| 39 <option value="Dark2">Dark2</option> | |
| 40 <option value="Reds">Reds</option> | |
| 41 <option value="Oranges">Oranges</option> | |
| 42 <option value="Greens">Greens</option> | |
| 43 <option value="Blues">Blues</option> | |
| 44 <option value="Greys">Greys</option> | |
| 45 <option value="Purples">Purples</option> | |
| 46 <option value="Paired">Paired</option> | |
| 47 <option value="Pastel1">Pastel1</option> | |
| 48 <option value="Pastel2">Pastel2</option> | |
| 49 <option value="spring">spring</option> | |
| 50 <option value="summer">summer</option> | |
| 51 <option value="autumn">autumn</option> | |
| 52 <option value="winter">winter</option> | |
| 53 <option value="hot">hot</option> | |
| 54 <option value="coolwarm">coolwarm</option> | |
| 55 <option value="cool">cool</option> | |
| 56 <option value="seismic">seismic</option> | |
| 57 <option value="terrain">terrain</option> | |
| 58 <option value="ocean">ocean</option> | |
| 59 <option value="rainbow">rainbow</option> | |
| 60 <option value="bone">bone</option> | |
| 61 <option value="flag">flag</option> | |
| 62 <option value="prism">prism</option> | |
| 63 <option value="cubehelix">cubehelix</option> | |
| 64 <option value="binary">binary</option> | |
| 65 <option value="pink">pink</option> | |
| 66 <option value="gray">gray</option> | |
| 67 <option value="copper">copper</option> | |
| 68 <option value="BrBG">BrBG</option> | |
| 69 <option value="BuGn">BuGn</option> | |
| 70 <option value="BuPu">BuPu</option> | |
| 71 <option value="GnBu">GnBu</option> | |
| 72 <option value="OrRd">OrRd</option> | |
| 73 <option value="PiYG">PiYG</option> | |
| 74 <option value="PRGn">PRGn</option> | |
| 75 <option value="PuOr">PuOr</option> | |
| 76 <option value="PuRd">PuRd</option> | |
| 77 <option value="PuBu">PuBu</option> | |
| 78 <option value="RdBu">RdBu</option> | |
| 79 <option value="RdGy">RdGy</option> | |
| 80 <option value="RdPu">RdPu</option> | |
| 81 <option value="YlGn">YlGn</option> | |
| 82 <option value="PuBuGn">PuBuGn</option> | |
| 83 <option value="RdYlGn">RdYlGn</option> | |
| 84 <option value="YlGnBu">YlGnBu</option> | |
| 85 <option value="YlOrBr">YlOrBr</option> | |
| 86 <option value="YlOrRd">YlOrRd</option> | |
| 87 <option value="gist_gray">gist_gray</option> | |
| 88 <option value="gist_stern">gist_stern</option> | |
| 89 <option value="gist_earth">gist_earth</option> | |
| 90 <option value="gist_yarg">gist_yarg</option> | |
| 91 <option value="gist_ncar">gist_ncar</option> | |
| 92 <option value="gist_rainbow">gist_rainbow</option> | |
| 93 <option value="gist_heat">gist_heat</option> | |
| 94 <option value="gnuplot">gnuplot</option> | |
| 95 <option value="gnuplot2">gnuplot2</option> | |
| 96 <option value="CMRmap">CMRmap</option> | |
| 97 <option value="bwr">bwr</option> | |
| 98 <option value="hsv">hsv</option> | |
| 99 <option value="brg">brg</option> | |
| 100 <option value="jet">jet</option> | |
| 101 <option value="afmhot">afmhot</option> | |
| 102 <option value="plasma">plasma</option> | |
| 103 <option value="Accent_r">Accent reversed</option> | |
| 104 <option value="Spectral_r">Spectral reversed</option> | |
| 105 <option value="Set1_r">Set1 reversed</option> | |
| 106 <option value="Set2_r">Set2 reversed</option> | |
| 107 <option value="Set3_r">Set3 reversed</option> | |
| 108 <option value="Dark2_r">Dark2 reversed</option> | |
| 109 <option value="Reds_r">Reds reversed</option> | |
| 110 <option value="Oranges_r">Oranges reversed</option> | |
| 111 <option value="Greens_r">Greens reversed</option> | |
| 112 <option value="Blues_r">Blues reversed</option> | |
| 113 <option value="Greys_r">Greys reversed</option> | |
| 114 <option value="Purples_r">Purples reversed</option> | |
| 115 <option value="Paired_r">Paired reversed</option> | |
| 116 <option value="Pastel1_r">Pastel1 reversed</option> | |
| 117 <option value="Pastel2_r">Pastel2 reversed</option> | |
| 118 <option value="spring_r">spring reversed</option> | |
| 119 <option value="summer_r">summer reversed</option> | |
| 120 <option value="autumn_r">autumn reversed</option> | |
| 121 <option value="winter_r">winter reversed</option> | |
| 122 <option value="hot_r">hot reversed</option> | |
| 123 <option value="coolwarm_r">coolwarm reversed</option> | |
| 124 <option value="cool_r">cool reversed</option> | |
| 125 <option value="seismic_r">seismic reversed</option> | |
| 126 <option value="terrain_r">terrain reversed</option> | |
| 127 <option value="ocean_r">ocean reversed</option> | |
| 128 <option value="rainbow_r">rainbow reversed</option> | |
| 129 <option value="bone_r">bone reversed</option> | |
| 130 <option value="flag_r">flag reversed</option> | |
| 131 <option value="prism_r">prism reversed</option> | |
| 132 <option value="cubehelix_r">cubehelix reversed</option> | |
| 133 <option value="binary_r">binary reversed</option> | |
| 134 <option value="pink_r">pink reversed</option> | |
| 135 <option value="gray_r">gray reversed</option> | |
| 136 <option value="copper_r">copper reversed</option> | |
| 137 <option value="BrBG_r">BrBG reversed</option> | |
| 138 <option value="BuGn_r">BuGn reversed</option> | |
| 139 <option value="BuPu_r">BuPu reversed</option> | |
| 140 <option value="GnBu_r">GnBu reversed</option> | |
| 141 <option value="OrRd_r">OrRd reversed</option> | |
| 142 <option value="PiYG_r">PiYG reversed</option> | |
| 143 <option value="PRGn_r">PRGn reversed</option> | |
| 144 <option value="PuOr_r">PuOr reversed</option> | |
| 145 <option value="PuRd_r">PuRd reversed</option> | |
| 146 <option value="PuBu_r">PuBu reversed</option> | |
| 147 <option value="RdBu_r">RdBu reversed</option> | |
| 148 <option value="RdGy_r">RdGy reversed</option> | |
| 149 <option value="RdPu_r">RdPu reversed</option> | |
| 150 <option value="YlGn_r">YlGn reversed</option> | |
| 151 <option value="PuBuGn_r">PuBuGn reversed</option> | |
| 152 <option value="RdYlBu_r" selected="True">RdYlBu reversed</option> | |
| 153 <option value="RdYlGn_r">RdYlGn reversed</option> | |
| 154 <option value="YlGnBu_r">YlGnBu reversed</option> | |
| 155 <option value="YlOrBr_r">YlOrBr reversed</option> | |
| 156 <option value="YlOrRd_r">YlOrRd reversed</option> | |
| 157 <option value="gist_gray_r">gist_gray reversed</option> | |
| 158 <option value="gist_stern_r">gist_stern reversed</option> | |
| 159 <option value="gist_earth_r">gist_earth reversed</option> | |
| 160 <option value="gist_yarg_r">gist_yarg reversed</option> | |
| 161 <option value="gist_ncar_r">gist_ncar reversed</option> | |
| 162 <option value="gist_rainbow_r">gist_rainbow reversed</option> | |
| 163 <option value="gist_heat_r">gist_heat reversed</option> | |
| 164 <option value="gnuplot_r">gnuplot reversed</option> | |
| 165 <option value="gnuplot2_r">gnuplot2 reversed</option> | |
| 166 <option value="CMRmap_r">CMRmap reversed</option> | |
| 167 <option value="bwr_r">bwr reversed</option> | |
| 168 <option value="hsv_r">hsv reversed</option> | |
| 169 <option value="brg_r">brg reversed</option> | |
| 170 <option value="jet_r">jet reversed</option> | |
| 171 <option value="afmhot_r">afmhot reversed</option> | |
| 172 <option value="plasma_r">plasma reversed</option> | |
| 173 </param> | |
| 174 </xml> | |
| 175 </macros> |