Mercurial > repos > iuc > schicexplorer_schicqualitycontrol

view test-data/scHicQualityControl/qc_report.txt @ 2:4a841ab67e3b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author iuc
date Fri, 14 Apr 2023 14:22:47 +0000
parents 5f2eacae0bb8
children
line wrap: on
line source

# QC report for single-cell Hi-C data generated by scHiCExplorer 4
scHi-C sample contained 20 cells:
Number of removed matrices containing bad chromosomes 0
Number of removed matrices due to low read coverage (< 100000): 10
Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
10 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.