diff macros.xml @ 0:293a939f28c8 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/seaborn commit 24dc6373560bd5e409fca84154634f5a528001c3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed May 14 08:39:42 2025 +0000
@@ -0,0 +1,87 @@
+<macros>
+    <token name="@TOOL_VERSION@">0.13.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+
+    <xml name="edam">
+        <edam_topics>
+            <edam_topic>topic_0092</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_0337</edam_operation>
+        </edam_operations>
+    </xml>
+
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">seaborn</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+
+    <xml name="inputs">
+        <param argument="--input_data" type="data" format="tsv,tabular,csv,parquet" label="Input data table" help="Provide the input data file in one of the supported formats: TSV, TXT, CSV, or Parquet. This file will be used to generate the plot." />
+    </xml>
+
+    <xml name="transformation">
+        <param name="transformation" type="select" label="Transformation" help="Choose a transformation function to apply to the numerical data in the input file. This can be useful for scaling or normalizing the data before plotting.">
+            <option value="lambda x: x" selected="true">no transformation</option>
+            <option value="np.log10">log10</option>
+            <option value="np.log2">log2</option>
+        </param>
+    </xml>
+
+    <xml name="columns" tokens="header">
+        <param name="xcol" type="data_column" data_ref="input_data" label="x-axis" optional="true" use_header_names="@HEADER@" help="Select the column from the input data to use for the x-axis of the plot."/>
+        <param name="ycol" type="data_column" data_ref="input_data" label="y-axis" optional="true" use_header_names="@HEADER@" help="Select the column from the input data to use for the y-axis of the plot."/>
+        <section name="advanced_input" title="Advanced">
+            <param name="hue" type="data_column" data_ref="input_data" label="hue" optional="true" use_header_names="@HEADER@" help="Select a column to group data by color (hue) in the plot. This is useful for visualizing categorical data."/>
+            <param name="col" type="data_column" data_ref="input_data" label="column-facetting" optional="true" use_header_names="@HEADER@" help="Select a column to create facets (subplots) along the columns of the plot grid. This is useful for visualizing how data varies across different categories or groups in the selected column."/>
+            <param name="row" type="data_column" data_ref="input_data" label="row-facetting" optional="true" use_header_names="@HEADER@" help="Select a column to create facets (subplots) along the rows of the plot grid. This allows you to compare data across different categories or groups in the selected column."/>
+        </section>
+    </xml>
+
+    <token name="@INIT@">
+import pandas as pd
+import seaborn as sns
+import numpy as np
+import matplotlib.pyplot as plt
+
+file_name = "$input_data"
+file_extension = "$input_data.ext"
+
+transformation = $transformation
+output_format = "png"
+output_file = "${output_file}"
+
+# load and transform data
+if file_extension == "csv":
+    df = pd.read_csv(file_name, index_col=index_col)
+elif file_extension in ["tsv", "tabular"]:
+    df = pd.read_csv(file_name, sep="\t", index_col=index_col)
+elif file_extension == "parquet":
+    df = pd.read_parquet(file_name, index_col=index_col)
+else:
+    raise ValueError(f"Unsupported file format: {file_extension}")
+data = df.apply(lambda x: transformation(x) if np.issubdtype(x.dtype, np.number) else x)
+    </token>
+
+    <xml name="creator">
+        <creator>
+            <person
+                givenName="Helge"
+                familyName="Hecht"
+                url="https://github.com/hechth"
+                identifier="0000-0001-6744-996X" />
+            <organization
+                url="https://www.recetox.muni.cz/"
+                email="[e-mail]"
+                name="RECETOX MUNI" />
+        </creator>
+    </xml>
+
+    <xml name="citation">
+        <citations>
+            <citation type="doi">10.21105/joss.03021</citation>
+        </citations>
+    </xml>
+</macros>
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