Mercurial > repos > iuc > semibin
comparison macros.xml @ 1:6b517dc161e4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
| author | iuc |
|---|---|
| date | Mon, 27 Mar 2023 08:25:14 +0000 |
| parents | 7b382efabb98 |
| children | 99ff9221182c |
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| 0:7b382efabb98 | 1:6b517dc161e4 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <token name="@TOOL_VERSION@">1.1.1</token> | 3 <token name="@TOOL_VERSION@">1.5.1</token> |
| 4 <token name="@VERSION_SUFFIX@">0</token> | 4 <token name="@VERSION_SUFFIX@">0</token> |
| 5 <token name="@PROFILE@">21.01</token> | 5 <token name="@PROFILE@">21.01</token> |
| 6 <xml name="biotools"> | 6 <xml name="biotools"> |
| 7 <xrefs> | 7 <xrefs> |
| 8 <xref type="bio.tools">semibin</xref> | 8 <xref type="bio.tools">semibin</xref> |
| 280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> | 280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> |
| 281 </data> | 281 </data> |
| 282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)"> | 282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)"> |
| 283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> | 283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> |
| 284 </data> | 284 </data> |
| 285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> | 285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage (co_cov)"> |
| 286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> | 286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> |
| 287 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov\.csv" format="csv" directory="output/" /> | 287 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov\.csv" format="csv" directory="output/" /> |
| 288 </collection> | 288 </collection> |
| 289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> |
| 290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> | 290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> |
| 291 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov\.csv" format="csv" directory="output/" /> | 291 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov\.csv" format="csv" directory="output/" /> |
| 292 </collection> | 292 </collection> |
| 293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> | 293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage (multi_cov)"> |
| 294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
| 295 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov.csv" format="csv" directory="output/samples/" /> | 295 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov.csv" format="csv" directory="output/samples/" /> |
| 296 </collection> | 296 </collection> |
| 297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample"> | 297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample"> |
| 298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
| 299 <discover_datasets pattern="(?P<designation>.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> | 299 <discover_datasets pattern="(?P<designation>.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> |
| 300 </collection> | 300 </collection> |
| 301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov)"> |
| 302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
| 303 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov.csv" format="csv" directory="output/samples/" /> | 303 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov.csv" format="csv" directory="output/samples/" /> |
| 304 </collection> | 304 </collection> |
| 305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov_sample)"> |
| 306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
| 307 <discover_datasets pattern="(?P<designation>.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> | 307 <discover_datasets pattern="(?P<designation>.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> |
| 308 </collection> | 308 </collection> |
| 309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs"> | 309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs"> |
| 310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter> | 310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter> |