Mercurial > repos > iuc > semibin_concatenate_fasta
comparison concatenate_fasta.xml @ 2:298542e0e136 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 13abac83068b126399ec415141007a48c2efaa84
author | iuc |
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date | Fri, 10 Nov 2023 20:50:29 +0000 |
parents | e6bc3455940e |
children |
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1:e6bc3455940e | 2:298542e0e136 |
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17 #else | 17 #else |
18 ln -s '$e' '${identifier}.fasta' && | 18 ln -s '$e' '${identifier}.fasta' && |
19 #end if | 19 #end if |
20 #end for | 20 #end for |
21 | 21 |
22 SemiBin concatenate_fasta | 22 SemiBin2 concatenate_fasta |
23 --input-fasta *.fasta | 23 --input-fasta *.fasta |
24 --output 'output' | 24 --output 'output' |
25 --separator '$separator' | 25 --separator '$separator' |
26 --compression none | |
26 -m $min_len | 27 -m $min_len |
27 ]]></command> | 28 ]]></command> |
28 <inputs> | 29 <inputs> |
29 <param argument="--input-fasta" type="data" multiple="true" format="fasta,fasta.gz" label="Contig sequences"/> | 30 <param argument="--input-fasta" type="data" multiple="true" format="fasta,fasta.gz" label="Contig sequences"/> |
30 <expand macro="separator"/> | 31 <expand macro="separator"/> |