Mercurial > repos > iuc > semibin_concatenate_fasta
comparison macros.xml @ 1:e6bc3455940e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
author | iuc |
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date | Mon, 27 Mar 2023 08:25:42 +0000 |
parents | dcc81bfe5f6a |
children | 298542e0e136 |
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0:dcc81bfe5f6a | 1:e6bc3455940e |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <macros> | 2 <macros> |
3 <token name="@TOOL_VERSION@">1.1.1</token> | 3 <token name="@TOOL_VERSION@">1.5.1</token> |
4 <token name="@VERSION_SUFFIX@">0</token> | 4 <token name="@VERSION_SUFFIX@">0</token> |
5 <token name="@PROFILE@">21.01</token> | 5 <token name="@PROFILE@">21.01</token> |
6 <xml name="biotools"> | 6 <xml name="biotools"> |
7 <xrefs> | 7 <xrefs> |
8 <xref type="bio.tools">semibin</xref> | 8 <xref type="bio.tools">semibin</xref> |
280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> | 280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> |
281 </data> | 281 </data> |
282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)"> | 282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)"> |
283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> | 283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> |
284 </data> | 284 </data> |
285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> | 285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage (co_cov)"> |
286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> | 286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> |
287 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov\.csv" format="csv" directory="output/" /> | 287 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov\.csv" format="csv" directory="output/" /> |
288 </collection> | 288 </collection> |
289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> |
290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> | 290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> |
291 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov\.csv" format="csv" directory="output/" /> | 291 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov\.csv" format="csv" directory="output/" /> |
292 </collection> | 292 </collection> |
293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> | 293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage (multi_cov)"> |
294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
295 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov.csv" format="csv" directory="output/samples/" /> | 295 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_cov.csv" format="csv" directory="output/samples/" /> |
296 </collection> | 296 </collection> |
297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample"> | 297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample"> |
298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
299 <discover_datasets pattern="(?P<designation>.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> | 299 <discover_datasets pattern="(?P<designation>.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> |
300 </collection> | 300 </collection> |
301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov)"> |
302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
303 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov.csv" format="csv" directory="output/samples/" /> | 303 <discover_datasets pattern=".*\.bam_(?P<designation>.*)_data_split_cov.csv" format="csv" directory="output/samples/" /> |
304 </collection> | 304 </collection> |
305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> | 305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov_sample)"> |
306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> | 306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> |
307 <discover_datasets pattern="(?P<designation>.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> | 307 <discover_datasets pattern="(?P<designation>.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> |
308 </collection> | 308 </collection> |
309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs"> | 309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs"> |
310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter> | 310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter> |