diff seq2hla.xml @ 1:5a7cd6c39085 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seq2hla commit c6f68e0efd9aa7e566289650ad126e0c7d192a8b"

--- a/seq2hla.xml	Thu Feb 20 18:27:07 2020 -0500
+++ b/seq2hla.xml	Wed Apr 07 12:37:40 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="seq2hla" name="seq2HLA" version="2.2.0">
+<tool id="seq2hla" name="seq2HLA" version="2.2.0+galaxy1">
     <description>HLA genotype and expression from RNA-seq</description>
     <requirements>
         <!-- needed because of some non POSIX compliant wc usage -->
@@ -22,8 +22,8 @@
         <param name="run_name" type="text" value="sample1" label="Name prefix for this analysis">
             <validator type="regex" message="Use letters,digits,_.-">^[A-Za-z0-9_\-+.]+$</validator>
         </param>
-        <param name="fastq_input1" type="data" format="fastqsanger" label="Select first set of reads" help="Specify dataset with forward reads"/>
-        <param name="fastq_input2" type="data" format="fastqsanger" label="Select second set of reads" help="Specify dataset with reverse reads"/>
+        <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select first set of reads" help="Specify dataset with forward reads"/>
+        <param name="fastq_input2" type="data" format="fastqsanger,fastqsanger.gz" label="Select second set of reads" help="Specify dataset with reverse reads"/>
         <param name="trim" type="integer" value="" min="0" optional="true" label="Trim bases from 3 prime" 
                help="trim this many bases from the low-quality end of each read" />
     </inputs>
@@ -40,8 +40,8 @@
     <tests>
         <test>
             <param name="run_name" value="test"/>
-            <param name="fastq_input1" ftype="fastqsanger" value="reads1.fastq"/>
-            <param name="fastq_input2" ftype="fastqsanger" value="reads2.fastq"/>
+            <param name="fastq_input1" ftype="fastqsanger.gz" value="reads1.fastq.gz"/>
+            <param name="fastq_input2" ftype="fastqsanger.gz" value="reads2.fastq.gz"/>
             <output name="c1_genotype4digits">
                 <assert_contents>
                     <has_text text="A*24:02" />