Mercurial > repos > iuc > seq2hla
diff seq2hla.xml @ 1:5a7cd6c39085 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seq2hla commit c6f68e0efd9aa7e566289650ad126e0c7d192a8b"
author | iuc |
---|---|
date | Wed, 07 Apr 2021 12:37:40 +0000 |
parents | 52bba1cd3823 |
children | 86d0ce0560a1 |
line wrap: on
line diff
--- a/seq2hla.xml Thu Feb 20 18:27:07 2020 -0500 +++ b/seq2hla.xml Wed Apr 07 12:37:40 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="seq2hla" name="seq2HLA" version="2.2.0"> +<tool id="seq2hla" name="seq2HLA" version="2.2.0+galaxy1"> <description>HLA genotype and expression from RNA-seq</description> <requirements> <!-- needed because of some non POSIX compliant wc usage --> @@ -22,8 +22,8 @@ <param name="run_name" type="text" value="sample1" label="Name prefix for this analysis"> <validator type="regex" message="Use letters,digits,_.-">^[A-Za-z0-9_\-+.]+$</validator> </param> - <param name="fastq_input1" type="data" format="fastqsanger" label="Select first set of reads" help="Specify dataset with forward reads"/> - <param name="fastq_input2" type="data" format="fastqsanger" label="Select second set of reads" help="Specify dataset with reverse reads"/> + <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select first set of reads" help="Specify dataset with forward reads"/> + <param name="fastq_input2" type="data" format="fastqsanger,fastqsanger.gz" label="Select second set of reads" help="Specify dataset with reverse reads"/> <param name="trim" type="integer" value="" min="0" optional="true" label="Trim bases from 3 prime" help="trim this many bases from the low-quality end of each read" /> </inputs> @@ -40,8 +40,8 @@ <tests> <test> <param name="run_name" value="test"/> - <param name="fastq_input1" ftype="fastqsanger" value="reads1.fastq"/> - <param name="fastq_input2" ftype="fastqsanger" value="reads2.fastq"/> + <param name="fastq_input1" ftype="fastqsanger.gz" value="reads1.fastq.gz"/> + <param name="fastq_input2" ftype="fastqsanger.gz" value="reads2.fastq.gz"/> <output name="c1_genotype4digits"> <assert_contents> <has_text text="A*24:02" />