# HG changeset patch
# User iuc
# Date 1772719446 0
# Node ID 02c253504d9bd38b104ccb33c0bd743a77065dfe
# Parent  8bb1d9180ce725568c73839c64dd998aa40b0ada
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqkit commit 3f642e2789c23709a041d4165285bcdce9a5c135

diff -r 8bb1d9180ce7 -r 02c253504d9b macros.xml
--- a/macros.xml	Thu Dec 04 12:51:35 2025 +0000
+++ b/macros.xml	Thu Mar 05 14:04:06 2026 +0000
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.12.0</token>
+    <token name="@TOOL_VERSION@">2.13.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@PROFILE@">24.0</token>
+    <token name="@PROFILE@">25.0</token>
     <token name="@FASTQ_TYPES@">fasta,fasta.gz,fastqsanger,fastqsanger.gz</token>
     <xml name="bio_tools">
         <xrefs>
diff -r 8bb1d9180ce7 -r 02c253504d9b seqkit_grep.xml
--- a/seqkit_grep.xml	Thu Dec 04 12:51:35 2025 +0000
+++ b/seqkit_grep.xml	Thu Mar 05 14:04:06 2026 +0000
@@ -70,7 +70,7 @@
                 <param argument="--use-regexp" type="boolean" truevalue="--use-regexp" falsevalue="" checked="false" label="Interpret pattern as regular expression" help="Enable regular expression matching"/>
             </when>
             <when value="file">
-                <param argument="--pattern-file" type="data" format="fasta" label="Pattern/motif file"/>
+                <param argument="--pattern-file" type="data" format="txt" label="Pattern/motif file" help="One pattern per line"/>
             </when>
         </conditional>
         <section name="search_options" title="Search options">