Mercurial > repos > iuc > seqkit_locate

diff test-data/locate_output1.tabular @ 0:642d73815dd1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 202bb1229cb0b8e8040a87d140edb6fdf7654628
author iuc
date Thu, 03 Nov 2022 19:35:37 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/locate_output1.tabular	Thu Nov 03 19:35:37 2022 +0000
@@ -0,0 +1,95 @@
+seqID	patternName	pattern	strand	start	end	matched
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	251	256	ATAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	435	440	AGAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	660	665	ATAGAG
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	741	746	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	852	857	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1142	1147	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1320	1325	ATAGGT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1621	1626	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1778	1783	AGAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1784	1789	ATACAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	1810	1815	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2038	2043	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2120	2125	CTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2235	2240	ATAGTT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2243	2248	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2318	2323	CTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2527	2532	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2549	2554	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2603	2608	ATATAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2651	2656	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2726	2731	ATAGTT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2744	2749	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	2902	2907	TTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3041	3046	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3488	3493	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3539	3544	TTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3675	3680	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3739	3744	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3770	3775	ATAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3825	3830	AGAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3862	3867	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	3870	3875	ATAGGT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4052	4057	ATATAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4068	4073	AGAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4080	4085	ACAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4388	4393	TTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4446	4451	ATAGAG
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4500	4505	AAAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4563	4568	ATAGAA
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4607	4612	ATAGAA
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4675	4680	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	+	4692	4697	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	4603	4608	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	4459	4464	TTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	4223	4228	GTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	4072	4077	ATGGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	4052	4057	ATATAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	3634	3639	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	3566	3571	ATAGAC
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2918	2923	ACAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2778	2783	ATACAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2709	2714	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2644	2649	ATAAAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2603	2608	ATATAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	2531	2536	ATTGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1734	1739	ATTGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1601	1606	ACAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1438	1443	ATAGAA
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1422	1427	ATAGGT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1329	1334	ATAGAG
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1146	1151	ATACAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	1121	1126	ATACAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	811	816	ATAGCT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	764	769	GTAGAT
+ENA|AB011145|AB011145.1	ATAGAT	ATAGAT	-	656	661	ATAGTT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	250	255	ATGGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	664	669	AAAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	1987	1992	ACAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	3540	3545	AGAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	3561	3566	AGAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	3886	3891	ATGGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	4400	4405	AGAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	+	4413	4418	ATACAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	3688	3693	ATAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	3065	3070	ATAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	3061	3066	ATAAAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	3025	3030	AAAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	2956	2961	ATAGGT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	2828	2833	AGAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	2719	2724	AAAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1975	1980	ATAAAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1951	1956	ATAGGT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1909	1914	AAAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1659	1664	AAAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1417	1422	ATAGAA
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	1319	1324	TTAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	802	807	ACAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	691	696	ACAGAT
+ENA|M10051|M10051.1	ATAGAT	ATAGAT	-	415	420	ATAGAC
+ENA|BC112106|BC112106.1	ATAGAT	ATAGAT	+	386	391	ATGGAT
+ENA|BC112106|BC112106.1	ATAGAT	ATAGAT	-	1000	1005	ATAGAT
+ENA|BC112106|BC112106.1	ATAGAT	ATAGAT	-	985	990	GTAGAT
+ENA|BC112106|BC112106.1	ATAGAT	ATAGAT	-	742	747	AAAGAT
+ENA|BC112106|BC112106.1	ATAGAT	ATAGAT	-	700	705	GTAGAT