Mercurial > repos > iuc > seqkit_locate
changeset 8:fe7a1e57a6cf draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 89cc1cb215aa5dc5ef6364bf13bbb1978367dce3
| author | iuc |
|---|---|
| date | Tue, 15 Jul 2025 19:36:17 +0000 |
| parents | 571e6933e972 |
| children | |
| files | macros.xml seqkit_locate.xml |
| diffstat | 2 files changed, 18 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/macros.xml Mon Mar 17 09:50:43 2025 +0000 +++ b/macros.xml Tue Jul 15 19:36:17 2025 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">2.10.0</token> - <token name="@VERSION_SUFFIX@">0</token> - <token name="@PROFILE@">20.09</token> + <token name="@VERSION_SUFFIX@">1</token> + <token name="@PROFILE@">24.0</token> <xml name="bio_tools"> <xrefs> <xref type="bio.tools">seqkit</xref>
--- a/seqkit_locate.xml Mon Mar 17 09:50:43 2025 +0000 +++ b/seqkit_locate.xml Tue Jul 15 19:36:17 2025 +0000 @@ -12,7 +12,7 @@ ln -s '${input}' '${input_identifier}' && seqkit locate ---threads \${GALAXY_SLOTS:-4} +--threads "\${GALAXY_SLOTS:-4}" #if $conditional_pattern.mode == 'expression' --pattern '"$conditional_pattern.pattern"' $conditional_pattern.use_regexp @@ -61,6 +61,7 @@ <add value="]"/> <add value="."/> <add value=","/> + <add value=":"/> </valid> </sanitizer> <validator type="regex" message="Pattern must not end with backslash.">.*[^\\]$</validator> @@ -118,6 +119,20 @@ <param name="input" value="input1.fasta.gz" ftype="fasta.gz"/> <conditional name="conditional_pattern"> <param name="mode" value="expression"/> + <param name="pattern" value="A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)"/> + <param name="use_regexp" value="true"/> + </conditional> + <output name="output" ftype="tabular"> + <assert_contents> + <has_n_lines n="372"/> + <has_n_columns n="7"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="1"> + <param name="input" value="input1.fasta.gz" ftype="fasta.gz"/> + <conditional name="conditional_pattern"> + <param name="mode" value="expression"/> <param name="pattern" value="A[TU]G"/> <param name="use_regexp" value="true"/> </conditional>