Mercurial > repos > iuc > seqkit_translate
changeset 0:a589a34457ee draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 235285be5ca6e2320545b16d017e1795b1d345ad
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,21 @@ +<macros> + <token name="@TOOL_VERSION@">2.3.1</token> + <token name="@VERSION_SUFFIX@">1</token> + <token name="@PROFILE@">20.09</token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">seqkit</xref> + </xrefs> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">seqkit</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1371/journal.pone.0163962</citation> + </citations> + </xml> +</macros> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/seqkit_translate.xml Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,119 @@ +<tool id="seqkit_translate" name="SeqKit translate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>Translate nucleotid sequence to protein sequence</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="bio_tools"/> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[ + seqkit translate + '$input' + -o '$output' + #if $translate_or_remove_unknown.selector == 'trimming': + $translate_or_remove_unknown.trim + #elif $translate_or_remove_unknown.selector == 'translate': + $translate_or_remove_unknown.allow_unknown_codon + #end if + $append_frame + $clean + #if $frame + -f '$frame' + #end if + $init_codon_as_M + #if $transl_table + -T '$transl_table' + #end if + +]]></command> + <inputs> + <param name="input" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input file"/> + <param argument="--frame" type="select" multiple="true" label="Frame(s) to translate" > + <option value="1" selected="true">1 (default)</option> + <option value="2" selected="false">2</option> + <option value="3" selected="false">3</option> + <option value="-1" selected="false">-1</option> + <option value="-2" selected="false">-2</option> + <option value="-3" selected="false">-3</option> + <option value="6" selected="false">All 6 frames</option> + </param> + <param argument="--append-frame" type="boolean" truevalue="--append-frame" falsevalue="" checked="false" label="Append frame information to sequence ID ?" /> + <param argument="--transl-table" type="select" label="Translate table / genetic code to use" > + <option value="1" selected="true">1: The Standard Code (default)</option> + <option value="2" selected="false">2: The Vertebrate Mitochondrial Code</option> + <option value="3" selected="false">3: The Yeast Mitochondrial Code</option> + <option value="4" selected="false">4: The Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code</option> + <option value="5" selected="false">5: The Invertebrate Mitochondrial Code</option> + <option value="6" selected="false">6: The Ciliate, Dasycladacean and Hexamita Nuclear Code</option> + <option value="9" selected="false">9: The Echinoderm and Flatworm Mitochondrial Code</option> + <option value="10" selected="false">10: The Euplotid Nuclear Code</option> + <option value="11" selected="false">11: The Bacterial, Archaeal and Plant Plastid Code</option> + <option value="12" selected="false">12: The Alternative Yeast Nuclear Code</option> + <option value="13" selected="false">13: The Ascidian Mitochondrial Code</option> + <option value="14" selected="false">14: The Alternative Flatworm Mitochondrial Code</option> + <option value="16" selected="false">16: Chlorophycean Mitochondrial Code</option> + <option value="21" selected="false">21: Trematode Mitochondrial Code</option> + <option value="22" selected="false">22: Scenedesmus obliquus Mitochondrial Code</option> + <option value="23" selected="false">23: Thraustochytrium Mitochondrial Code</option> + <option value="24" selected="false">24: Pterobranchia Mitochondrial Code</option> + <option value="25" selected="false">25: Candidate Division SR1 and Gracilibacteria Code</option> + <option value="26" selected="false">26: Pachysolen tannophilus Nuclear Code</option> + <option value="27" selected="false">27: Karyorelict Nuclear</option> + <option value="28" selected="false">28: Condylostoma Nuclear</option> + <option value="29" selected="false">29: Mesodinium Nuclear</option> + <option value="30" selected="false">30: Peritrich Nuclear</option> + <option value="31" selected="false">31: Blastocrithidia Nuclear</option> + </param> + <param argument="--clean" type="boolean" truevalue="--clean" falsevalue="" checked="false" label="Change all STOP codon positions from the '*' character to 'X' (an unknown residue) ?" /> + <conditional name="translate_or_remove_unknown" > + <param name="selector" type="select" label="Translate or remove unknown code ?" > + <option value="trimming">Remove all 'X' and '*' characters</option> + <option value="translate">Translate unknown code to 'X'</option> + </param> + <when value="trimming"> + <param argument="--trim" type="boolean" truevalue="--trim" falsevalue="" checked="false" label="Remove all 'X' and '*' characters from the right end of the translation" /> + </when> + <when value="translate"> + <param argument="--allow-unknown-codon" type="boolean" truevalue="--allow-unknown-codon" falsevalue="" checked="false" label="Translate unknown code to 'X' ?" /> + </when> + </conditional> + <param argument="--init-codon-as-M" type="boolean" truevalue="--init-codon-as-M" falsevalue="" checked="false" label="Translate initial codon at beginning to 'M'" /> + </inputs> + <outputs> + <data name="output" format_source="input" label="${input.name} translate (${tool.name})"/> + </outputs> + <tests> + <!-- 1. fastq --> + <test expect_num_outputs="1"> + <param name="input" value="input1.fastq.gz" ftype="fastqsanger.gz"/> + <output decompress="true" name="output" file="translate_output3.fastq.gz" ftype="fastqsanger.gz"/> + </test> + <!-- 2. fasta --> + <test expect_num_outputs="1"> + <param name="input" value="input1.fasta.gz" ftype="fasta.gz"/> + <conditional name="translate_or_remove_unknown"> + <param name="allow_unknown_codon" value="true"/> + </conditional> + <param name="append_frame" value="true"/> + <param name="clean" value="true"/> + <param name="frame" value="2,3" /> + <param name="init_codon_as_M" value="true" /> + <param name="transl_table" value="3" /> + <output decompress="true" name="output" file="translate_output1.fasta.gz" ftype="fasta.gz"/> + </test> + <!-- 3. fastq + trim --> + <test expect_num_outputs="1"> + <param name="input" value="input1.fastq.gz" ftype="fastqsanger.gz"/> + <conditional name="translate_or_remove_unknown"> + <param name="trim" value="true" /> + </conditional> + <output decompress="true" name="output" file="translate_output2.fastq.gz" ftype="fastqsanger.gz"/> + </test> + </tests> + <help> +**What it does** + +Translate DNA/RNA to protein sequence (supporting ambiguous bases) + + </help> + <expand macro="citations"/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fx2tab_output1.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,5 @@ +1/2 TATACTACTGTCATGTTTGCTTTTTTCGTGCTCATTACCTTATCGTATGCTTCCATCCAAAGATCTAGTTGTTTATAATATTCTCCCGGCCTTACTTCAAC ?@<DDDADDFAAC@>GG<FDCBHIIGB:8??DEAHGAFEDF<B?F9DBFFCDHF>48BBCF)8877=@=@C7=E??EBD:AADA;>C3;BB6:A@>>@:3> +2/2 AAAAAAACTTTCTTTACAGGCGTAAAGAAAGTGAAATTGACAGTATTTATACATGAAATAGCAATGTCTTTCCCACTTCCCTACGCTGGCATTAACCAGAT <@@DA6DDF42ABGF9F?F@C<EDDDFBGI>04BGC>BFF><?*88BDFDEAFFDGCGEFEEFIFFFEF>EBDBB@@:ACCCAB8@?=;B<@BABBBBB?# +3/2 GTGCCATCATTTTCTATCCATTATTATGGATTATTGGCTCATCGTTTAATCCGGGTGATAGTTTATCTGGATCAAGTATTATTCCACAAAATGCAACGTTA =BBFFFFFHHHHHJJJJJJJJJJJJIJIJEIIGIJJJHGIGGIIGHIDIJGHIIJ?FFHGIIJJJJJJJJHGIHHHCEHFFFFFFFFEAECCDADDDDDDD +4/2 TTCAAAACACATAAAGCTAATTGCCGCATATGACAATATTGCTAAAATAATTTTTTTACCAGATATCGGTGTTAATCGAAATAATGTACTTTCGGTCATTT BBCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJJIJJJJJJIJJJJJJIIJJJJJJJIJJHHHHHFFDDCDEEEDDDDDDDDEDDDFFFEDDDDDDDDE +5/2 ACTTGCCAATGCGATGCACCAATCTTTTCAGCAATAATCGGCAAAATTGGGTCGACTACTCCTATACCTGAAAAGGCAAGGAAAGTAGCCAACACTGTAAT BCCFFFFFHHHHHIJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJIHIIJIJHHHHFFFFFFEEEEEEDDDDDDDDDDDDDCDDDDDDDDDDDDDED
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fx2tab_output2.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,6 @@ +#id length avg.qual +1/2 101 24.98 +2/2 101 20.44 +3/2 101 37.13 +4/2 101 37.61 +5/2 101 37.28
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fx2tab_output3.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,3 @@ +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. GAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACTCTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCATTGGCAGATTACATCAGGCAACAAAAAAGTGACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAGCAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATTTGGGGATGTTTCAAAACCGGAAAGATATAGTGGCGACAACATAATCTACAAACCACCAGGGCATTCTGCTCCGGATATGGTGTACTTGGGAGCTATGACAAATTTTGATGTGACTTACAATTGGATTCAAGATAAATGTGTTCCTCTTGTCCGAGAAATAACATTTGAAAATGGAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAGTTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGGTACAATAAACTTTTTACATGCCGATTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAAACTGCACAGAGAATTCCATCATGGACCTGACCCAACTGATACAGCCCCAGGAGAGCAAGCCCAAGATGTAGCAAGCAGTCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAGCTTTAAAAACTTGAAAAACAGTTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCTATATTTTCATAATTCTATGTGTATTTTTATTTTGAATAAACAGAAAGAAATTTTGGGTTTTTAATTTTTTTCTCCCCGACTCAAAATGCATTGTCATTTAATATAGTAGCCTCTTAAAAAAAAAAAAACCTGCTAGGATTTAAAAATAAAAATCAGAGGCCTATCTCCACTTTAAATCTGTCCTGTAAAAGTTTTATAAATCAAATGAAAGGTGACATTGCCAGAAACTTACCATTAACTTGCACTACTAGGGTAGGGAGGACTTAGGATGTTTCCTGTGTCGTATGTGCTTTTCTTTCTTTCATATGATCAATTCTGTTGGTATTTTCAGTATCTCATTTCTCAAAGCTAAAGAGATATACATTCTGGATACTTGGGAGGGGAATAAATTAAAGTTTTCACACTGTGTACTGTGTTTTACTGATTGGTTGGATATTGCTTATGAAAATTCCATAGTGGTATTTTTTTGGATTCTTAATGTGTAACTTAAACATACTTTGAAGTGGAGGAGAGTCATAAGACAGAACATTTGGCAGGAATTGTCCTTATGAAACAAGAAAAAGAAAATGAAAAGTATTATTAAGCTTCTGTGTTTGTCTAAAAATGTGGCATATGGATGGCATTTAAAACTTTGAATGAATTATACCTAAATCTGGGACAGGGAGGTGACAGTGGAACAGGCTACCAATCAGAACTAGATGACTTTTAAGGCTCCTCCTATTATGAGACTTCAATTTCCAAAGAGAAGAACTAGCAGAGAAATTGTATTTCAGTAATTTTAAGCTCCTTCTGTCTTGTAGAGTCTTGTTATAGTTGTATAAATCAAAAACACAGAATAAGGAACATATTTAACTTTTTTTCATTATAAAATGGTTAGAGGACCCTACCCCCTCTAGATTCCCTGATTTCCCCAGGCCTGCAGCATACAGTAAGATGGGTCCCTGTGCCAGGCCTCAATACTGCCAGGGAATAAAACCAGAGGGAGAGGACCCTCAGTGTCATATCAGGAAGCCCAGTGCCAGAGGACAGACAGGTTCAAAACTGGCTTTTCCTCTGGGCCTGGGTTGGTGCTATAGGCCAAGGGTCATTTTATACTTGGGTATAAATCAATCCCAGTTTGGGAAAAGATTATTTTTAAGCTTAAAAGGCTGACATGTGCCATTATATGTAGTATGTAATATATGTAACATCTTCCAATTCTTTTAAAATAAAATTAATATTTATAATGGATATTTAATGATTGTTATTTTTAAAAACCAGCTTATAATTCCTCGTTATGCATGATTTATCCAAAGTTTCCATAGTTTTATTCAAAATAATAAATGTTAATAAGGTGATAAGGGGTATATTTAATGTATTGTATCAAATTGTGAATAAGAAAGTAGGATGGAGCTTTCTAGAGGTTGGGCCTTAGTTCTGTTATCCTCATTGCTTTTAACCAATAAGTTAAATGAAGTTAGAGTTATGGTCTTCAGGTTAGATTATGGACCAGATCTGTGAGGGTCAGCATGGAAATTCACATTCAACAAGGTAGCACACAGGACCAAGAGCAGCACATGCAATCAACTGGAATAATATAGTAATCCTGTAACTGGGTTTGAAAAAATAATCAACAAAAGATACAATTCAAGGGTTAGGTTGCAGAGAGCTGGCTTGAGAGTAGTTATTATGAAAAAGGCCTCAAGGAGTACGTGTTCAGTATGCTCTAAGATGATAAAGTGGCTGTTAAAAAGGGAGTTGATTTGAGGAAGTATTACTTAGCATTCATGCATATTGGGCTTAGGCTCTAGCCCTGCCACTATCATTGTCTTCTCTGGACTGTGAAGTCACTGAGGACAAGGAAACTAAATTTAATGTCTGTATCACTAGTGCCTAGAATTTCTGGACACTTAGTAGTCACCATCAGGCGTTTATTTAATGAATGAGAAGCAAAGTGACCTTGGTTACTTTTTTACCCTGAGGGGCTCAGCACTCATTAGGACTTGGTGCCTAATTTTATAAAAAGTCACTAAGCTCAAGTGCTTGGATGAAAGGACAGCGTGGATAAAAAGGTTTTTAAAACATGGATGTTAAGGCTGTTTTGCTTGGAGAAGACTTGGGACTGGGACAGTCTTTAGATATTATTTGAAATGCTGGCACTGTCTATCTGGATCCCAGGGCTTGAACTAGGATTTGAGGAAGTCACAGGGAAGCAGATTTCAGTCTGACATTTATTCAGTGCAAGTTTTTTGGTGCTGTAGTATATGATGAAAGATGTAAAGCTGAATAAAGCATTATTTCTGCCCTAGAGTTGTTCACAGCCTAGTCAGGCATATGGATATGTAAACAATGACTGTAACGTGTTATAGATGTAAAGACAAAATAAAGGTTAAAGAGGGCATAAAGGAGCACTCAATTGCAGAGATTTGAGGACATTATTTTTATTTTGAGCTTTAAAAAGATGAATAGGTGTTCTCAGGAGGTAGGGATCTGGCTGAGAGGGAATAATCTGAGCAAAGGTATGAAACAGCCTAATGCATTAGAGAAAAAAGTTCTTTTAGTAAGGCATTTGGGGTTGGGGAAGCTAGAAAAAGAAATGGGAGCTGGTCACACAGGGCCTTGTGTGCCAGACTAAGGGGTTTGTAGTATATATTGTAGGCAGAAGAGATCCATCAACAGATTGCAAGCAAGGAAGTATGTTCACTTTAAAGTTTGAGAAAGAATAGTGTGGAAGCACGTCTCAAATTTAGACTTACTTGTTCCCCCTCTGAACCGTGAATCAGACCATTTCAGGTAGAAGTCTTCCCCGGTTTATCTGATCTACTCGGGGCCTCAGGCTTCTCAGCTGGGAAGAGAGGATGCAAGACCAGACTGAAGAACACGGTTGAGTCCCCAGAACCAAAAGGGGGCCTTTCTGCTTCTTAGCCAGCTACCTCTTCGAGTTTTTCAAATTGTGAGGGGGACCATAAAAGGATGGAAACTTTTAGATGACATTCTACAAATTATTTTTTTCTTTAAATTAAAAGAACCTAGCCAATAAGATAGAGAATGGGCATCTAAGGCATCTCAGAGCTCTCTGATGAAGCCAGGTTGTCAAAGATCATTTGCAAAAGAAGGGAAAACTGGCATGACAAAAGCTACAGAGAGGAGAGTGAAATATAGAAGTGTTTGAAATGTTCAAGCTCACAATAAGCTTAAATTTATAGAAAATGCTAAGGTTGTCAAGAAGGCTTTTTTTTTTTTCTTTTTTAAACCTGAGGGCAAAAAGGAATGGATAAAGTAGTGTAATGGATTGACAATCAGGAAGAACAGAATAACTCAGTTTTTTTTTCTCCTACAAGGAGATATGGCTGGACCAAAATAAAATGACATGAAATTGCAAAAATGAAAAT +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. GGGGGGCTGCGCGGCCGGGTCGGTGCGCACACGAGAAGGACGCGCGGCCCCCAGCGCTCTTGGGGGCCGCCTCGGAGCATGACCCCCGCGGGCCAGCGCCGCGCGCCTGATCCGAGGAGACCCCGCGCTCCCGCAGCCATGGGCACCGGGGGCCGGCGGGGGGCGGCGGCCGCGCCGCTGCTGGTGGCGGTGGCCGCGCTGCTACTGGGCGCCGCGGGCCACCTGTACCCCGGAGAGGTGTGTCCCGGCATGGATATCCGGAACAACCTCACTAGGTTGCATGAGCTGGAGAATTGCTCTGTCATCGAAGGACACTTGCAGATACTCTTGATGTTCAAAACGAGGCCCGAAGATTTCCGAGACCTCAGTTTCCCCAAACTCATCATGATCACTGATTACTTGCTGCTCTTCCGGGTCTATGGGCTCGAGAGCCTGAAGGACCTGTTCCCCAACCTCACGGTCATCCGGGGATCACGACTGTTCTTTAACTACGCGCTGGTCATCTTCGAGATGGTTCACCTCAAGGAACTCGGCCTCTACAACCTGATGAACATCACCCGGGGTTCTGTCCGCATCGAGAAGAACAATGAGCTCTGTTACTTGGCCACTATCGACTGGTCCCGTATCCTGGATTCCGTGGAGGATAATCACATCGTGTTGAACAAAGATGACAACGAGGAGTGTGGAGACATCTGTCCGGGTACCGCGAAGGGCAAGACCAACTGCCCCGCCACCGTCATCAACGGGCAGTTTGTCGAACGATGTTGGACTCATAGTCACTGCCAGAAAGTTTGCCCGACCATCTGTAAGTCACACGGCTGCACCGCCGAAGGCCTCTGTTGCCACAGCGAGTGCCTGGGCAACTGTTCTCAGCCCGACGACCCCACCAAGTGCGTGGCCTGCCGCAACTTCTACCTGGACGGCAGGTGTGTGGAGACCTGCCCGCCCCCGTACTACCACTTCCAGGACTGGCGCTGTGTGAACTTCAGCTTCTGCCAGGACCTGCACCACAAATGCAAGAACTCGCGGAGGCAGGGCTGCCACCAATACGTCATTCACAACAACAAGTGCATCCCTGAGTGTCCCTCCGGGTACACGATGAATTCCAGCAACTTGCTGTGCACCCCATGCCTGGGTCCCTGTCCCAAGGTGTGCCACCTCCTAGAAGGCGAGAAGACCATCGACTCGGTGACGTCTGCCCAGGAGCTCCGAGGATGCACCGTCATCAACGGGAGTCTGATCATCAACATTCGAGGAGGCAACAATCTGGCAGCTGAGCTAGAAGCCAACCTCGGCCTCATTGAAGAAATTTCAGGGTATCTAAAAATCCGCCGATCCTACGCTCTGGTGTCACTTTCCTTCTTCCGGAAGTTACGTCTGATTCGAGGAGAGACCTTGGAAATTGGGAACTACTCCTTCTATGCCTTGGACAACCAGAACCTAAGGCAGCTCTGGGACTGGAGCAAACACAACCTCACCACCACTCAGGGGAAACTCTTCTTCCACTATAACCCCAAACTCTGCTTGTCAGAAATCCACAAGATGGAAGAAGTTTCAGGAACCAAGGGGCGCCAGGAGAGAAACGACATTGCCCTGAAGACCAATGGGGACAAGGCATCCTGTGAAAATGAGTTACTTAAATTTTCTTACATTCGGACATCTTTTGACAAGATCTTGCTGAGATGGGAGCCGTACTGGCCCCCCGACTTCCGAGACCTCTTGGGGTTCATGCTGTTCTACAAAGAGGCCCCTTATCAGAATGTGACGGAGTTCGATGGGCAGGATGCGTGTGGTTCCAACAGTTGGACGGTGGTAGACATTGACCCACCCCTGAGGTCCAACGACCCCAAATCACAGAACCACCCAGGGTGGCTGATGCGGGGTCTCAAGCCCTGGACCCAGTATGCCATCTTTGTGAAGACCCTGGTCACCTTTTCGGATGAACGCCGGACCTATGGGGCCAAGAGTGACATCATTTATGTCCAGACAGATGCCACCAACCCCTCTGTGCCCCTGGATCCAATCTCAGTGTCTAACTCATCATCCCAGATTATTCTGAAGTGGAAACCACCCTCCGACCCCAATGGCAACATCACCCACTACCTGGTTTTCTGGGAGAGGCAGGCGGAAGACAGTGAGCTGTTCGAGCTGGATTATTGCCTCAAAGGGCTGAAGCTGCCCTCGAGGACCTGGTCTCCACCATTCGAGTCTGAAGATTCTCAGAAGCACAACCAGAGTGAGTATGAGGATTCGGCCGGCGAATGCTGCTCCTGTCCAAAGACAGACTCTCAGATCCTGAAGGAGCTGGAGGAGTCCTCGTTTAGGAAGACGTTTGAGGATTACCTGCACAACGTGGTTTTCGTCCCCAGAAAAACCTCTTCAGGCACTGGTGCCGAGGACCCTAGGCCATCTCGGAAACGCAGGTCCCTTGGCGATGTTGGGAATGTGACGGTGGCCGTGCCCACGGTGGCAGCTTTCCCCAACACTTCCTCGACCAGCGTGCCCACGAGTCCGGAGGAGCACAGGCCTTTTGAGAAGGTGGTGAACAAGGAGTCGCTGGTCATCTCCGGCTTGCGACACTTCACGGGCTATCGCATCGAGCTGCAGGCTTGCAACCAGGACACCCCTGAGGAACGGTGCAGTGTGGCAGCCTACGTCAGTGCGAGGACCATGCCTGAAGCCAAGGCTGATGACATTGTTGGCCCTGTGACGCATGAAATCTTTGAGAACAACGTCGTCCACTTGATGTGGCAGGAGCCGAAGGAGCCCAATGGTCTGATCGTGCTGTATGAAGTGAGTTATCGGCGATATGGTGATGAGGAGCTGCATCTCTGCGTCTCCCGCAAGCACTTCGCTCTGGAACGGGGCTGCAGGCTGCGTGGGCTGTCACCGGGGAACTACAGCGTGCGAATCCGGGCCACCTCCCTTGCGGGCAACGGCTCTTGGACGGAACCCACCTATTTCTACGTGACAGACTATTTAGACGTCCCGTCAAATATTGCAAAAATTATCATCGGCCCCCTCATCTTTGTCTTTCTCTTCAGTGTTGTGATTGGAAGTATTTATCTATTCCTGAGAAAGAGGCAGCCAGATGGGCCGCTGGGACCGCTTTACGCTTCTTCAAACCCTGAGTATCTCAGTGCCAGTGATGTGTTTCCATGCTCTGTGTACGTGCCGGACGAGTGGGAGGTGTCTCGAGAGAAGATCACCCTCCTTCGAGAGCTGGGGCAGGGCTCCTTCGGCATGGTGTATGAGGGCAATGCCAGGGACATCATCAAGGGTGAGGCAGAGACCCGCGTGGCGGTGAAGACGGTCAACGAGTCAGCCAGTCTCCGAGAGCGGATTGAGTTCCTCAATGAGGCCTCGGTCATGAAGGGCTTCACCTGCCATCACGTGGTGCGCCTCCTGGGAGTGGTGTCCAAGGGCCAGCCCACGCTGGTGGTGATGGAGCTGATGGCTCACGGAGACCTGAAGAGCTACCTCCGTTCTCTGCGGCCAGAGGCTGAGAATAATCCTGGCCGCCCTCCCCCTACCCTTCAAGAGATGATTCAGATGGCGGCAGAGATTGCTGACGGGATGGCCTACCTGAACGCCAAGAAGTTTGTGCATCGGGACCTGGCAGCGAGAAACTGCATGGTCGCCCATGATTTTACTGTCAAAATTGGAGACTTTGGAATGACCAGAGACATCTATGAAACGGATTACTACCGGAAAGGGGGCAAGGGTCTGCTCCCTGTACGGTGGATGGCACCGGAGTCCCTGAAGGATGGGGTCTTCACCACTTCTTCTGACATGTGGTCCTTTGGCGTGGTCCTTTGGGAAATCACCAGCTTGGCAGAACAGCCTTACCAAGGCCTGTCTAATGAACAGGTGTTGAAATTTGTCATGGATGGAGGGTATCTGGATCAACCCGACAACTGTCCAGAGAGAGTCACTGACCTCATGCGCATGTGCTGGCAATTCAACCCCAAGATGAGGCCAACCTTCCTGGAGATTGTCAACCTGCTCAAGGACGACCTGCACCCCAGCTTTCCAGAGGTGTCGTTCTTCCACAGCGAGGAGAACAAGGCTCCCGAGAGTGAGGAGCTGGAGATGGAGTTTGAGGACATGGAGAATGTGCCCCTGGACCGTTCCTCGCACTGTCAGAGGGAGGAGGCGGGGGGCCGGGATGGAGGGTCCTCGCTGGGTTTCAAGCGGAGCTACGAGGAACACATCCCTTACACACACATGAACGGAGGCAAGAAAAACGGGCGGATTCTGACCTTGCCTCGGTCCAATCCTTCCTAACAGTGCCTACCGTGGCGGGGGCGGGCAGGGGTTCCCATTTTCGCTTTCCTCTGGTTTGAAAGCCTCTGGAAAACTCAGGATTCTCACGACTCTACCATGTCCAGTGGAGTTCAGAGATCGTTCCTATACATTTCTGTTCATCTTAAGGTGGACTCGTTTGGTTACCAATTTAACTAGTCCTGCAGAGGATTTAACTGTGAACCTGGAGGGCAAGGGGTTTCCACAGTTGCTGCTCCTTTGGGGCAACGACGGTTTCAAACCAGGATTTTGTGTTTTTTCGTTCCCCCCACCCGCCCCCAGCAGATGGAAAGAAAGCACCTGTTTTTACAAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGGTGTCTGAGCTTCAGTATAAAAGACAAAACTTCCTGTTTGTGGAACAAAATTTCGAAAGAAAAAACCAAA +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. CCAGCTGGAGCCCTGAGTGGCTGAGCTCAGGCCTTCGCAGCATTCTTGGGTGGGAGCAGCCACGGGTCAGCCACAAGGGCCACAGCCATGAATGGCACAGAAGGCCCTAACTTCTACGTGCCCTTCTCCAATGCGACGGGTGTGGTACGCAGCCCCTTCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTGGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTAGCCGTGGCTGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCTACACCTCTCTGCATGGATACTTCGTCTTCGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTGCGCCGCACCCCCACTCGCCGGCTGGTCCAGGTACATCCCCGAGGGCCTGCAGTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGGTCAACAACGAGTCTTTTGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTATCATCTTTTTCTGCTATGGGCAGCTCGTCTTCACCGTCAAGGAGGCCGCTGCCCAGCAGCAGGAGTCAGCCACCACACAGAAGGCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGCTCCAACTTCGGTCCCATCTTCATGACCATCCCAGCGTTCTTTGCCAAGAGCGCCGCCATCTACAACCCTGTCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGAGGCCTCTGCTACCGTGTCCAAGACGGAGACGAGCCAGGTGGCCCCGGCCTAAGACCTGCCTAGGACTCTGTGGCCGACTATAGGCGTCTCCCATCCCCTACACCTTCCCCCAGCCACAGCCATCCCACCAG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fx2tab_output4.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,4 @@ +#id length GC GC-Skew alphabet avg.qual seq.hash +ENA|AB011145|AB011145.1 4796 38.47 11.65 ACGT 0.00 c19cf05cadbdbc26e22efc2201acfcec +ENA|M10051|M10051.1 4723 55.24 0.50 ACGT 0.00 4f6bbf79e427ef90b6f31de5023ad241 +ENA|BC112106|BC112106.1 1213 58.78 -15.01 ACGT 0.00 3b099f7df389373bb7e3269efc819599
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/locate_output1.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,95 @@ +seqID patternName pattern strand start end matched +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 251 256 ATAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 435 440 AGAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 660 665 ATAGAG +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 741 746 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 852 857 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1142 1147 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1320 1325 ATAGGT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1621 1626 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1778 1783 AGAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1784 1789 ATACAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 1810 1815 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2038 2043 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2120 2125 CTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2235 2240 ATAGTT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2243 2248 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2318 2323 CTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2527 2532 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2549 2554 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2603 2608 ATATAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2651 2656 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2726 2731 ATAGTT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2744 2749 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 2902 2907 TTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3041 3046 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3488 3493 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3539 3544 TTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3675 3680 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3739 3744 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3770 3775 ATAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3825 3830 AGAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3862 3867 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 3870 3875 ATAGGT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4052 4057 ATATAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4068 4073 AGAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4080 4085 ACAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4388 4393 TTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4446 4451 ATAGAG +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4500 4505 AAAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4563 4568 ATAGAA +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4607 4612 ATAGAA +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4675 4680 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT + 4692 4697 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 4603 4608 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 4459 4464 TTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 4223 4228 GTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 4072 4077 ATGGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 4052 4057 ATATAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 3634 3639 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 3566 3571 ATAGAC +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2918 2923 ACAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2778 2783 ATACAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2709 2714 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2644 2649 ATAAAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2603 2608 ATATAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 2531 2536 ATTGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1734 1739 ATTGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1601 1606 ACAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1438 1443 ATAGAA +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1422 1427 ATAGGT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1329 1334 ATAGAG +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1146 1151 ATACAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 1121 1126 ATACAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 811 816 ATAGCT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 764 769 GTAGAT +ENA|AB011145|AB011145.1 ATAGAT ATAGAT - 656 661 ATAGTT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 250 255 ATGGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 664 669 AAAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 1987 1992 ACAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 3540 3545 AGAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 3561 3566 AGAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 3886 3891 ATGGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 4400 4405 AGAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT + 4413 4418 ATACAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 3688 3693 ATAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 3065 3070 ATAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 3061 3066 ATAAAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 3025 3030 AAAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 2956 2961 ATAGGT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 2828 2833 AGAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 2719 2724 AAAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1975 1980 ATAAAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1951 1956 ATAGGT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1909 1914 AAAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1659 1664 AAAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1417 1422 ATAGAA +ENA|M10051|M10051.1 ATAGAT ATAGAT - 1319 1324 TTAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 802 807 ACAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 691 696 ACAGAT +ENA|M10051|M10051.1 ATAGAT ATAGAT - 415 420 ATAGAC +ENA|BC112106|BC112106.1 ATAGAT ATAGAT + 386 391 ATGGAT +ENA|BC112106|BC112106.1 ATAGAT ATAGAT - 1000 1005 ATAGAT +ENA|BC112106|BC112106.1 ATAGAT ATAGAT - 985 990 GTAGAT +ENA|BC112106|BC112106.1 ATAGAT ATAGAT - 742 747 AAAGAT +ENA|BC112106|BC112106.1 ATAGAT ATAGAT - 700 705 GTAGAT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/locate_output2.bed Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,202 @@ +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 136 139 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 174 177 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 254 257 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 269 272 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 275 278 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 296 299 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 322 325 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 353 356 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 377 380 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 479 482 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 484 487 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 487 490 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 490 493 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 692 695 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 695 698 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 725 728 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 796 799 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 814 817 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 827 830 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 855 858 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 890 893 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 940 943 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 977 980 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1028 1031 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1120 1123 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1124 1127 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1145 1148 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1220 1223 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1265 1268 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1346 1349 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1441 1444 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1510 1513 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1629 1632 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1693 1696 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1709 1712 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1730 1733 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1866 1869 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1902 1905 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1972 1975 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 1991 1994 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2028 2031 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2037 2040 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2041 2044 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2060 2063 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2123 2126 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2147 2150 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2294 2297 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2358 2361 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2578 2581 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2590 2593 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2597 2600 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2606 2609 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2650 2653 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2661 2664 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2701 2704 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2705 2708 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2747 2750 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2777 2780 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2811 2814 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2875 2878 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2889 2892 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2908 2911 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2933 2936 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 2981 2984 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3093 3096 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3125 3128 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3135 3138 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3191 3194 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3278 3281 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3342 3345 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3346 3349 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3451 3454 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3487 3490 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3491 3494 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3554 3557 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3668 3671 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3671 3674 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3678 3681 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3738 3741 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3744 3747 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3753 3756 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3773 3776 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3865 3868 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3925 3928 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 3938 3941 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4000 4003 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4100 4103 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4262 4265 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4377 4380 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4391 4394 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4452 4455 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4483 4486 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4531 4534 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4577 4580 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4613 4616 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4674 4677 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4691 4694 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4750 4753 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4769 4772 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4774 4777 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4788 4791 A[TU]G 0 + +ENA|AB011145|AB011145.1 Homo sapiens mRNA for KIAA0573 protein, partial cds. 4794 4797 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 78 81 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 138 141 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 249 252 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 280 283 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 330 333 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 384 387 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 418 421 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 510 513 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 546 549 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 586 589 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 667 670 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 761 764 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1013 1016 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1098 1101 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1127 1130 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1214 1217 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1420 1423 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1542 1545 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1603 1606 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1627 1630 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1682 1685 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1728 1731 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1759 1762 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1774 1777 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1783 1786 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1875 1878 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1903 1906 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1939 1942 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1954 1957 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1978 1981 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 1990 1993 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2083 2086 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2242 2245 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2261 2264 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2434 2437 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2443 2446 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2670 2673 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2689 2692 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2713 2716 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2745 2748 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2770 2773 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2788 2791 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2809 2812 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 2815 2818 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3091 3094 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3148 3151 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3158 3161 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3243 3246 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3250 3253 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3259 3262 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3355 3358 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3369 3372 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3444 3447 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3453 3456 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3543 3546 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3552 3555 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3576 3579 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3633 3636 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3643 3646 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3675 3678 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3691 3694 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3744 3747 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3766 3769 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3792 3795 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3862 3865 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3885 3888 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3889 3892 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3942 3945 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3948 3951 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 3972 3975 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4092 4095 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4107 4110 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4114 4117 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4168 4171 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4227 4230 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4383 4386 A[TU]G 0 + +ENA|M10051|M10051.1 Human insulin receptor mRNA, complete cds. 4590 4593 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 87 90 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 91 94 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 130 133 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 188 191 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 201 204 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 216 219 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 342 345 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 385 388 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 413 416 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 513 516 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 541 544 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 549 552 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 573 576 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 705 708 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 732 735 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 754 757 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 843 846 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 855 858 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 948 951 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 1008 1011 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 1011 1014 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 1035 1038 A[TU]G 0 + +ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds. 1078 1081 A[TU]G 0 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/locate_output3.gtf Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,4 @@ +ENA|AB011145|AB011145.1 SeqKit location 2270 2276 0 + . gene_id "test_motif2"; +ENA|AB011145|AB011145.1 SeqKit location 2642 2648 0 + . gene_id "test_motif2"; +ENA|AB011145|AB011145.1 SeqKit location 2655 2661 0 + . gene_id "test_motif2"; +ENA|AB011145|AB011145.1 SeqKit location 2771 2777 0 + . gene_id "test_motif2";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/motif_sequence.fasta Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,4 @@ +>test_motif +ATATACTAT +>test_motif2 +ATATTTA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/stats_output1.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,2 @@ +file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%) +input1_fastq_gz FASTQ DNA 5 505 101 101.0 101 50.5 101.0 50.5 0 101 98.02 89.31 35.45
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/stats_output2.tabular Fri Mar 29 09:46:24 2024 +0000 @@ -0,0 +1,2 @@ +file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) GC(%) +input1_fasta_gz FASTA DNA 3 10732 1213 3577.3 4796 2968.0 4723.0 4759.5 0 4723 0.00 0.00 48.15