comparison seqtk_hety.xml @ 9:4b494533146a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6

8:3da72230c066

<?xml version="1.0"?>
<tool id="seqtk_hety" name="seqtk_hety" version="@TOOL_VERSION@.1">
    <description>regional heterozygosity</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
    </expand>
    <expand macro="stdio"/>
    <command><![CDATA[

        <param argument="-w" type="integer" value="50000" label="Window size" />
        <param argument="-t" type="integer" value="5" label="# start positions in a window" />
        <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Treat lowercases as masked" />
    </inputs>
    <outputs>
        <data name="default" format="tabular" label="Heterozygous regions in $in_file.name"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_hety.fa"/>
            <param name="w" value="8"/>

9:4b494533146a

<?xml version="1.0"?>
<tool id="seqtk_hety" name="seqtk_hety" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
    <description>regional heterozygosity</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements">
        <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
    </expand>
    <expand macro="stdio"/>
    <command><![CDATA[

        <param argument="-w" type="integer" value="50000" label="Window size" />
        <param argument="-t" type="integer" value="5" label="# start positions in a window" />
        <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Treat lowercases as masked" />
    </inputs>
    <outputs>
        <data name="default" format="tabular" label="${tool.name} on ${on_string}: Heterozygous regions"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_hety.fa"/>
            <param name="w" value="8"/>