comparison seqtk_sample.xml @ 9:4b494533146a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6

8:3da72230c066

<?xml version="1.0"?>
<tool id="seqtk_sample" name="seqtk_sample" version="@TOOL_VERSION@.2">
    <description>random subsample of fasta or fastq sequences</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="stdio"/>
    <command><![CDATA[
seqtk sample
-s $s

        <section name="advanced" title="Advanced options" expanded="false">
            <param name="single_pass_mode" type="boolean" truevalue="" falsevalue="-2" checked="false" label="Enable 1-pass mode" help="Use this if the number of reads you want to sample is small enough to fit into memory. If you're not sure, don't use this."/>
        </section>
    </inputs>
    <outputs>
        <data name="default" format_source="in_file" label="Subsample of reads from $in_file.name"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_sample.fa"/>
            <param name="subsample_size" value="4"/>

9:4b494533146a

<?xml version="1.0"?>
<tool id="seqtk_sample" name="seqtk_sample" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
    <description>random subsample of fasta or fastq sequences</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements"/>
    <expand macro="stdio"/>
    <command><![CDATA[
seqtk sample
-s $s

        <section name="advanced" title="Advanced options" expanded="false">
            <param name="single_pass_mode" type="boolean" truevalue="" falsevalue="-2" checked="false" label="Enable 1-pass mode" help="Use this if the number of reads you want to sample is small enough to fit into memory. If you're not sure, don't use this."/>
        </section>
    </inputs>
    <outputs>
        <data name="default" format_source="in_file" label="${tool.name} on ${on_string}: Subsample of reads"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_sample.fa"/>
            <param name="subsample_size" value="4"/>