Mercurial > repos > iuc > seqtk
comparison seqtk_fqchk.xml @ 5:a09586d5149a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
| author | iuc |
|---|---|
| date | Fri, 11 Jan 2019 05:15:20 -0500 |
| parents | ecf1c30da3a2 |
| children | 3da72230c066 |
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| 4:ecf1c30da3a2 | 5:a09586d5149a |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@WRAPPER_VERSION@.0"> | 2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@TOOL_VERSION@.1"> |
| 3 <description>fastq QC (base/quality summary)</description> | 3 <description>fastq QC (base/quality summary)</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"> |
| 8 <requirement type="package" version="@AWK_VERSION@">gawk</requirement> | |
| 9 </expand> | |
| 8 <expand macro="stdio"/> | 10 <expand macro="stdio"/> |
| 9 <command><![CDATA[ | 11 <command><![CDATA[ |
| 10 seqtk fqchk | 12 seqtk fqchk |
| 11 -q $q | 13 -q $q |
| 12 '$in_file' | awk '{if(NR<4){print "#"$0}else{print $0}}' | 14 '$in_file' | awk '{if(NR<4){print "#"$0}else{print $0}}' |