comparison seqtk_mutfa.xml @ 4:ecf1c30da3a2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2

3:bc7d99f46a5d

    <expand macro="stdio"/>
    <command><![CDATA[
seqtk mutfa
'$in_file'
'$in_snp'
> '$default'
    ]]></command>
    <inputs>
        <expand macro="in_faq"/>
        <param name="in_snp" type="data" format="tabular" label="Input SNP file"/>
    </inputs>

    <tests>
        <test>
            <param name="in_file" value="seqtk_mutfa.fa"/>
            <param name="in_snp" value="seqtk_mutfa.snp"/>
            <output name="default" file="seqtk_mutfa.out" ftype="fasta"/>
        </test>
    </tests>
    <help><![CDATA[
**What it does**

4:ecf1c30da3a2

    <expand macro="stdio"/>
    <command><![CDATA[
seqtk mutfa
'$in_file'
'$in_snp'
@CONDITIONAL_GZIP_OUT@
    ]]></command>
    <inputs>
        <expand macro="in_faq"/>
        <param name="in_snp" type="data" format="tabular" label="Input SNP file"/>
    </inputs>

    <tests>
        <test>
            <param name="in_file" value="seqtk_mutfa.fa"/>
            <param name="in_snp" value="seqtk_mutfa.snp"/>
            <output name="default" file="seqtk_mutfa.out" ftype="fasta"/>
        </test>
        <test>
            <param name="in_file" value="seqtk_mutfa.fa.gz" ftype="fasta.gz"/>
            <param name="in_snp" value="seqtk_mutfa.snp"/>
            <output name="default" file="seqtk_mutfa.out.gz" ftype="fasta.gz"/>
        </test>
    </tests>
    <help><![CDATA[
**What it does**