comparison seqtk_trimfq.xml @ 9:4b494533146a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6

8:3da72230c066

<?xml version="1.0"?>
<tool id="seqtk_trimfq" name="seqtk_trimfq" version="@TOOL_VERSION@.1">
    <description>trim FASTQ using the Phred algorithm</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="stdio"/>
    <command><![CDATA[
seqtk trimfq
#if $mode.mode_select == "quality":

                <param argument="-e" type="integer" value="0" label="Trim INT bp from right" />
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="default" format_source="in_file" label="$in_file.name trimmed"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/>
            <param name="mode_select" value="quality"/>

9:4b494533146a

<?xml version="1.0"?>
<tool id="seqtk_trimfq" name="seqtk_trimfq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
    <description>trim FASTQ using the Phred algorithm</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements"/>
    <expand macro="stdio"/>
    <command><![CDATA[
seqtk trimfq
#if $mode.mode_select == "quality":

                <param argument="-e" type="integer" value="0" label="Trim INT bp from right" />
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="default" format_source="in_file" label="${tool.name} on ${on_string}: trimmed"/>
    </outputs>
    <tests>
        <test>
            <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/>
            <param name="mode_select" value="quality"/>