diff seqtk_trimfq.xml @ 4:ecf1c30da3a2 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2

--- a/seqtk_trimfq.xml	Mon Jun 05 13:27:11 2017 -0400
+++ b/seqtk_trimfq.xml	Wed Oct 17 05:59:21 2018 -0400
@@ -16,7 +16,7 @@
     -e $mode.e
 #end if
 '$in_file'
-> '$default'
+@CONDITIONAL_GZIP_OUT@
     ]]></command>
     <inputs>
         <expand macro="in_faq"/>
@@ -40,18 +40,25 @@
     </outputs>
     <tests>
         <test>
-            <param name="in_file" value="seqtk_trimfq.fq"/>
+            <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/>
             <param name="mode_select" value="quality"/>
             <param name="q" value="0.05"/>
             <param name="l" value="30"/>
-            <output name="default" file="seqtk_trimfq_default.fq" ftype="fastq"/>
+            <output name="default" file="seqtk_trimfq_default.fq" ftype="fastqsanger"/>
         </test>
         <test>
-            <param name="in_file" value="seqtk_trimfq.fq"/>
+            <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/>
             <param name="mode_select" value="position"/>
             <param name="b" value="5"/>
             <param name="e" value="5"/>
-            <output name="default" file="seqtk_trimfq_be.fq" ftype="fastq"/>
+            <output name="default" file="seqtk_trimfq_be.fq" ftype="fastqsanger"/>
+        </test>
+        <test>
+            <param name="in_file" value="seqtk_trimfq.fq.gz" ftype="fastqsanger.gz"/>
+            <param name="mode_select" value="position"/>
+            <param name="b" value="5"/>
+            <param name="e" value="5"/>
+            <output name="default" file="seqtk_trimfq_be.fq.gz" ftype="fastqsanger.gz"/>
         </test>
     </tests>
     <help><![CDATA[