view seqtk_randbase.xml @ 1:61718851f199 draft

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<?xml version="1.0"?>
<tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0">
  <description>choose a random base from hets</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio"/>
  <command><![CDATA[seqtk randbase
      $in_file
> $default]]></command>
  <inputs>
    <expand macro="in_faq"/>
  </inputs>
  <outputs>
    <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/>
  </outputs>
  <tests>
    <test>
      <param name="in_file" value="seqtk_randbase.fa"/>
      <output name="default" file="seqtk_randbase.out" ftype="fasta"/>
    </test>
  </tests>
  <help><![CDATA[
**What it does**

Randomly resolves ambiguous bases

::

    # Input fasta
    >ambig
    ACGTMRWSYK

results in

::

    # Output result
    >ambig
    ACGTCGTGTT

@ATTRIBUTION@
]]></help>
</tool>