# HG changeset patch
# User iuc
# Date 1748343816 0
# Node ID abea23542a6bc8e4439bb7d6ffc2fa34f5cf05a3
# Parent  8e2c32a7c0a9de7e5fd0579bfbf8c46e1cd8cad3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sequali commit 483a13382456fea4f1934e35804e0dc6c86703c5

diff -r 8e2c32a7c0a9 -r abea23542a6b sequali.xml
--- a/sequali.xml	Thu Apr 10 16:42:32 2025 +0000
+++ b/sequali.xml	Tue May 27 11:03:36 2025 +0000
@@ -1,7 +1,7 @@
 <tool id="sequali" name="sequali" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
     <description>Fast sequencing data quality metrics for short and long reads</description>
     <macros>
-        <token name="@TOOL_VERSION@">0.12.0</token>
+        <token name="@TOOL_VERSION@">1.0.1</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <xrefs>
@@ -216,6 +216,7 @@
 - Insert size metrics for paired read data.
 - Per tile quality plots for illumina reads.
 - Channel and other plots for nanopore reads.
+- Reproducible reports without timestamps.
 
 -----
 
@@ -227,6 +228,7 @@
     - For sequences called by guppy additional plots for nanopore specific data will be provided.
 - (unaligned) BAM with single reads. Read-pair information is currently ignored.
     - For BAM data as delivered by dorado additional nanopore plots will be provided.
+    - For aligned BAM files, secondary and supplementary reads are ignored similar to how samtools fastq handles the data.
 
 -----
 
@@ -239,4 +241,4 @@
     <citations>
         <citation type="doi">10.1093/bioadv/vbaf010</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>